Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008904.1 Corchorus capsularis cultivar CVL-1 contig08925, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64409

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9340--9574
113
2.1
112
86
3
319
31
19
25
24
1.98
9508--9578
31
2.2
33
77
12
83
28
22
29
19
1.98
9523--9606
31
2.7
31
87
5
107
23
25
29
21
1.99
9411--9818
144
2.8
144
87
2
566
29
19
25
24
1.99
19367--20454
481
2.3
480
93
1
1862
28
13
18
39
1.89
22695--22746
26
2.0
27
92
3
88
23
19
3
53
1.61
22748--22790
19
2.2
20
84
12
54
25
20
2
51
1.60
22767--22884
27
4.3
26
76
11
96
22
22
2
52
1.59
22833--23023
37
5.5
35
78
17
168
17
22
2
57
1.52
22865--22995
11
13.9
10
67
26
65
17
22
2
58
1.50
22906--22986
27
2.9
28
84
12
105
17
22
2
58
1.51
22787--23041
65
4.0
65
85
3
329
18
22
2
56
1.55
22933--23081
38
4.2
36
73
20
136
16
24
2
57
1.52
22971--23043
27
2.7
27
85
10
105
16
23
2
57
1.52
22998--23081
39
2.2
36
81
8
96
15
25
2
57
1.51
23090--23170
22
3.7
22
74
11
76
22
16
4
56
1.58
23102--23658
22
25.2
23
67
21
140
21
20
4
54
1.63
23204--23256
20
2.7
19
85
8
70
24
18
5
50
1.68
23330--23499
20
8.6
20
68
19
81
19
20
4
55
1.61
23191--23653
128
3.7
120
88
7
603
21
21
4
52
1.64
23645--23701
30
1.9
30
92
0
96
22
19
8
49
1.76
26179--26253
24
3.2
24
67
17
77
36
18
18
26
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26180--26271
45
2.0
45
100
0
184
36
17
19
26
1.94
26192--26263
22
3.2
22
67
18
67
36
16
19
27
1.93
27206--27276
20
3.8
20
66
21
55
60
19
15
4
1.51
27202--27276
34
2.2
33
92
2
123
60
21
14
4
1.51
32964--33494
35
15.3
35
84
5
661
32
17
10
39
1.84
34187--34226
21
1.9
21
89
0
62
42
20
0
37
1.52
34179--34294
48
2.3
49
82
8
137
41
18
0
38
1.57
36834--36883
25
2.0
26
84
4
66
36
26
22
16
1.94
59060--59119
30
2.0
30
100
0
120
26
6
26
40
1.81
62481--62649
22
7.7
23
73
16
126
40
9
15
34
1.79
62542--62690
44
3.4
42
76
14
115
41
8
14
34
1.77
62544--62686
22
6.6
22
70
7
71
40
8
14
36
1.77
62837--63046
22
9.6
22
68
17
91
41
8
15
34
1.77
62961--63031
25
2.9
25
83
4
92
38
5
16
39
1.73
62946--63024
25
3.4
23
76
8
70
41
5
13
39
1.67
63257--63310
22
2.5
22
84
0
63
44
11
7
37
1.68

Tables:   1

The End!