Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008905.1 Corchorus capsularis cultivar CVL-1 contig08926, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21035

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5514--5544
2
15.0
2
93
6
53
48
3
0
48
1.17
9940--9964
2
12.5
2
100
0
50
48
0
0
52
1.00
10442--10502
32
1.9
32
83
3
79
21
14
18
45
1.84
15344--15376
2
16.5
2
100
0
66
48
0
0
51
1.00
16519--16549
15
2.1
15
93
0
53
70
0
6
22
1.09
17398--17440
11
3.6
11
77
17
50
16
25
0
58
1.38
17505--17820
21
14.8
21
71
14
186
20
20
6
51
1.69
17601--17694
15
6.5
15
73
16
81
20
18
5
56
1.60
17601--17744
29
5.0
29
71
16
111
19
18
5
56
1.61
17628--17759
43
3.0
43
94
3
230
18
19
6
54
1.66
17854--17976
35
3.5
35
87
4
158
18
24
2
54
1.56
17897--17965
28
2.4
29
76
7
70
17
21
1
59
1.45
18122--18326
37
5.9
37
70
22
176
27
17
7
47
1.75
18093--18352
70
3.7
73
82
12
282
27
17
7
47
1.75
18133--18352
70
3.2
70
86
10
328
27
17
7
47
1.74
18208--18385
64
2.8
63
89
5
263
26
17
7
48
1.73
18357--18420
19
3.4
19
66
0
56
28
15
3
53
1.57
18367--18446
38
2.1
38
85
0
106
27
12
7
52
1.66

Tables:   1

The End!