genome.fa.s8907.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008907.1 Corchorus capsularis cultivar CVL-1 contig08928, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41685

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32--124	11	7.1	14	65	22	58	34	1	8	55	1.37
63--130	26	2.6	26	86	9	102	35	0	10	54	1.35
63--130	15	5.1	14	72	26	58	35	0	10	54	1.35
139--198	25	2.5	25	89	5	88	43	0	21	35	1.53
655--1659	438	2.3	437	83	4	1238	43	12	12	31	1.80
3290--3365	38	2.0	38	100	0	152	55	10	13	21	1.67
8905--9124	108	2.0	111	91	2	356	41	24	16	18	1.90
10380--10451	31	2.3	32	72	11	78	61	8	4	26	1.43
14162--14200	10	3.9	10	93	0	69	28	0	41	30	1.57
14495--14536	18	2.3	19	87	4	59	50	4	19	26	1.67
21605--21777	75	2.3	75	77	9	183	40	15	13	30	1.86
30628--30685	28	2.1	27	87	6	82	22	17	6	53	1.67
30687--30790	27	3.9	27	87	8	142	21	25	2	50	1.63
30733--30859	66	1.9	66	87	1	184	18	22	2	56	1.52
30765--30835	18	3.9	18	68	15	56	15	21	4	59	1.53
30800--30865	27	2.4	28	85	9	84	16	21	1	60	1.43
30733--30863	65	2.0	65	85	2	174	18	23	2	55	1.54
31023--31078	20	2.8	20	84	12	64	26	16	5	51	1.65
31097--31157	21	2.8	22	85	5	79	21	22	3	52	1.61
31007--31244	128	1.9	127	89	2	370	23	21	3	52	1.63
31156--31275	20	5.8	20	74	17	86	22	18	4	55	1.60
31007--31280	22	12.9	22	73	12	139	22	19	4	53	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31326--31406	36	2.4	33	81	6	81	23	18	7	50	1.72
36010--36059	25	2.0	25	84	11	66	50	14	12	24	1.76
36163--36226	29	2.2	29	86	2	85	43	28	12	15	1.83
36442--36553	46	2.4	46	84	1	143	37	21	16	25	1.93
36501--36773	92	3.0	90	85	8	358	32	26	15	25	1.95
36881--37075	54	3.6	54	82	1	219	33	23	13	29	1.93
41418--41477	28	2.2	28	88	5	88	21	18	6	53	1.67
41418--41584	26	6.5	27	76	15	90	20	22	4	52	1.63
41459--41507	19	2.7	18	84	6	62	20	24	4	51	1.65
41498--41580	26	3.2	26	93	3	141	20	25	2	51	1.59

Tables:   1

The End!