Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008911.1 Corchorus capsularis cultivar CVL-1 contig08932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20860

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
599--635
14
2.6
14
100
0
74
51
18
0
29
1.47
645--722
24
3.2
24
63
22
63
53
10
2
33
1.48
627--722
49
2.0
49
100
0
192
53
10
2
34
1.47
2095--2219
66
2.0
63
84
6
162
44
9
18
27
1.80
2650--2789
22
6.4
22
77
8
126
38
19
5
36
1.75
2832--2964
22
6.0
22
76
10
117
39
18
9
33
1.82
3128--3166
19
2.0
20
85
14
55
61
2
2
33
1.23
3511--3575
30
2.1
31
85
2
87
49
4
18
27
1.67
3603--3627
2
12.5
2
100
0
50
48
0
0
52
1.00
4520--4626
33
3.2
32
81
5
108
9
28
39
23
1.85
10624--10649
5
5.2
5
100
0
52
19
0
42
38
1.51
18678--18702
2
12.5
2
100
0
50
52
0
0
48
1.00
18755--18781
7
3.9
7
100
0
54
40
14
0
44
1.46
19180--19211
2
16.5
2
93
6
57
50
0
0
50
1.00
19419--19446
14
2.0
14
100
0
56
57
14
7
21
1.61

Tables:   1

The End!