Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008916.1 Corchorus capsularis cultivar CVL-1 contig08937, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39148

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
925--975
19
2.8
18
82
5
59
9
52
0
37
1.34
1631--1675
21
2.1
22
91
4
74
17
40
8
33
1.81
1842--1929
33
2.7
33
82
3
115
12
32
40
13
1.82
2063--2133
13
5.2
13
77
17
72
60
12
0
26
1.32
2051--2123
30
2.5
30
82
8
96
60
12
0
27
1.32
2062--2142
42
1.9
43
94
2
146
60
11
0
28
1.31
2093--2146
25
2.1
26
83
10
67
62
11
0
25
1.28
7048--7119
33
2.2
33
85
5
92
30
9
22
37
1.86
7126--7188
33
1.9
33
93
0
108
28
11
17
42
1.83
7126--7200
33
2.3
33
88
0
105
25
10
21
42
1.85
12409--12449
21
2.0
21
85
0
55
29
21
9
39
1.86
12547--12607
30
2.0
30
100
0
122
18
29
19
32
1.95
12547--12628
30
2.8
30
90
1
112
14
26
21
36
1.93
18858--18938
6
13.7
6
70
12
51
7
11
3
77
1.09
18865--18934
22
3.2
22
82
11
72
7
8
4
80
1.03
18883--18938
16
3.4
16
80
9
60
7
8
3
80
1.01
20904--20944
22
1.9
22
85
5
57
14
9
19
56
1.66
32486--32762
35
7.8
35
83
10
309
40
9
18
32
1.81

Tables:   1

The End!