Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008920.1 Corchorus capsularis cultivar CVL-1 contig08941, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63847

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
649--689
2
20.5
2
84
0
55
41
0
7
51
1.30
810--858
2
24.5
2
100
0
98
51
48
0
0
1.00
3693--3729
2
18.5
2
94
0
65
51
2
0
45
1.15
4380--4414
18
1.9
18
88
11
54
71
0
25
2
1.00
4703--4736
16
2.1
16
88
0
50
61
2
0
35
1.11
4516--4797
141
2.1
131
81
11
318
46
9
8
36
1.66
19066--19110
20
2.2
20
84
7
56
40
15
6
37
1.74
22478--22510
16
2.1
16
94
0
57
72
6
21
0
1.05
22918--22942
13
1.9
13
100
0
50
56
0
0
44
0.99
24942--25010
29
2.3
29
78
9
68
30
5
20
43
1.75
29850--29910
31
2.0
31
83
6
79
31
13
18
37
1.88
30121--30169
24
2.0
24
84
0
62
36
2
10
51
1.48
30722--31325
35
17.7
35
82
9
689
38
10
18
31
1.85
30722--31325
104
5.9
105
83
9
689
38
10
18
31
1.85
30722--31325
139
4.4
138
82
9
672
38
10
18
31
1.85
33490--33546
23
2.4
25
82
11
75
61
5
8
24
1.46
34132--34172
21
2.0
20
95
4
73
41
24
0
34
1.55
34131--34177
12
4.2
12
75
25
57
38
23
0
38
1.55
37899--37933
1
35.0
1
100
0
70
100
0
0
0
0.00
38949--39145
99
2.0
99
97
1
378
34
14
21
30
1.93
43954--44127
87
2.0
87
100
0
348
33
18
8
40
1.80
51465--51525
19
3.1
19
81
9
86
37
11
19
31
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51461--51524
21
3.2
20
82
8
85
37
10
20
31
1.87
59872--59982
37
3.0
37
77
6
102
41
27
16
15
1.88
60763--60805
13
3.2
13
81
15
52
60
6
0
32
1.23
61829--61899
23
2.9
25
79
14
85
2
7
15
74
1.15

Tables:   1

The End!