Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008924.1 Corchorus capsularis cultivar CVL-1 contig08945, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40177

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4687--4713
6
4.5
6
100
0
54
29
0
14
55
1.40
5310--5375
31
2.1
31
88
8
98
48
6
19
25
1.72
5458--5497
14
2.9
14
84
0
53
52
2
22
22
1.59
5472--5599
35
3.6
35
86
4
159
53
2
24
19
1.56
5572--5784
22
9.5
22
72
13
132
53
4
21
21
1.64
5419--5604
85
2.2
85
80
5
214
54
2
23
19
1.57
5681--5754
21
3.5
21
83
3
94
48
8
21
21
1.76
5763--5943
36
4.9
35
77
11
166
49
8
21
20
1.75
5763--5897
35
3.8
36
83
6
168
49
8
21
20
1.74
5850--5883
14
2.3
15
90
5
52
55
8
11
23
1.63
5762--5902
71
2.0
71
88
0
210
48
9
21
20
1.77
5865--5955
21
4.3
21
77
2
94
53
6
19
19
1.66
5865--5967
42
2.5
41
76
4
116
51
6
21
20
1.70
6027--6090
27
2.2
29
78
13
78
60
0
23
15
1.34
18728--18769
20
2.1
21
86
8
61
28
7
7
57
1.52
18727--18888
53
3.2
53
60
19
126
29
9
8
52
1.63
18726--18925
100
2.0
100
99
0
391
30
11
9
49
1.70
18828--18869
20
2.1
21
86
8
61
28
7
7
57
1.52
24510--24553
22
2.0
22
86
0
61
13
22
11
52
1.72
26441--26881
220
2.0
220
100
0
882
35
6
28
29
1.83
28125--28685
48
11.7
48
88
1
847
13
23
24
37
1.91
29845--29887
12
3.9
11
82
17
54
11
18
0
69
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29847--29887
21
2.0
21
90
9
66
12
19
0
68
1.21
29849--29894
21
2.2
21
84
7
58
15
21
0
63
1.31
30013--30055
12
3.9
11
82
17
54
11
18
0
69
1.17
30015--30055
21
2.0
21
90
9
66
12
19
0
68
1.21
29786--30121
168
2.0
168
99
0
663
13
22
7
56
1.62
30514--30557
8
5.4
8
82
15
54
4
13
0
81
0.83

Tables:   1

The End!