Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008927.1 Corchorus capsularis cultivar CVL-1 contig08948, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5580
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35


Found at i:5098 original size:18 final size:17

Alignment explanation


    Indices: 5056--5098  Score: 50
    Period size: 18  Copynumber: 2.5  Consensus size: 17

       5046 ATTTACCATT

                     *       
       5056 AAGCCCATTCTTTATAA
          1 AAGCCCATTATTTATAA

             * *              
       5073 AGGGCCATTATCTTATAA
          1 AAGCCCATTAT-TTATAA

                    
       5091 AAGCCCAT
          1 AAGCCCAT

       5099 CTCTTTCTAA


Statistics
Matches: 20,  Mismatches: 5, Indels: 1
        0.77            0.19        0.04

Matches are distributed among these distances:
  17    8  0.40
  18   12  0.60

ACGTcount: A:0.35, C:0.23, G:0.12, T:0.30


Consensus pattern (17 bp):   
AAGCCCATTATTTATAA
Done.