Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008932.1 Corchorus capsularis cultivar CVL-1 contig08953, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7765
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33


Found at i:5587 original size:6 final size:6

Alignment explanation


    Indices: 5576--5610  Score: 63
    Period size: 6  Copynumber: 6.0  Consensus size: 6

       5566 ATTCTGCTTC

                                                     
       5576 AGATTT AGATTT AGATTT AGATTT AGATTT A-ATTT
          1 AGATTT AGATTT AGATTT AGATTT AGATTT AGATTT

       5611 GCTTTGCTTT


Statistics
Matches: 29,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   5    4  0.14
   6   25  0.86

ACGTcount: A:0.34, C:0.00, G:0.14, T:0.51


Consensus pattern (6 bp):   
AGATTT

Done.