Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008934.1 Corchorus capsularis cultivar CVL-1 contig08955, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28012

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1153--1225
22
3.2
23
69
16
62
24
2
10
61
1.42
4901--4963
29
2.1
31
88
5
94
30
15
4
49
1.66
4907--4970
29
2.1
31
85
5
87
34
12
4
48
1.62
5923--5960
19
2.0
20
85
15
53
28
5
2
63
1.30
6098--6144
22
2.1
22
96
0
85
42
10
12
34
1.78
6293--6541
22
11.5
22
71
15
103
42
9
13
34
1.77
6269--6541
44
6.3
44
75
13
135
41
9
13
35
1.77
6416--6539
22
5.5
23
84
3
119
41
9
12
37
1.75
6592--6720
22
5.8
22
71
12
75
34
11
17
37
1.86
6702--6740
19
2.1
19
85
9
53
51
5
12
30
1.62
12273--12336
30
2.1
30
85
0
83
20
37
1
40
1.62
13121--13150
15
2.0
15
93
0
51
26
10
33
30
1.89
17307--18276
53
17.4
54
77
12
765
26
20
4
48
1.69
17693--17800
36
3.0
36
94
0
180
30
19
4
45
1.70
17773--18273
168
3.0
167
90
4
744
26
19
4
49
1.66
17765--18276
110
4.6
111
83
6
601
26
19
4
49
1.67
24727--24842
50
2.3
51
86
7
166
39
0
19
40
1.52
24808--24848
22
1.9
22
85
5
57
36
0
19
43
1.51
25538--26038
35
14.3
35
86
1
646
38
8
17
34
1.81

Tables:   1

The End!