genome.fa.s8941.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008941.1 Corchorus capsularis cultivar CVL-1 contig08962, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76707

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13160--13201	21	2.0	22	81	13	52	28	30	2	38	1.70
15977--16008	5	6.8	5	92	7	50	81	0	0	18	0.70
17865--17947	43	2.0	42	92	2	139	28	28	18	24	1.98
21362--21427	34	1.9	35	84	9	91	48	10	15	25	1.77
21508--21653	36	4.0	36	82	11	181	46	8	20	24	1.78
21705--22125	35	11.8	35	75	14	274	48	10	16	24	1.77
21894--21968	11	6.6	11	90	3	114	56	6	28	9	1.56
21894--21968	23	3.3	22	90	5	114	56	6	28	9	1.56
21971--22164	35	5.4	36	87	8	202	46	12	13	27	1.79
22157--22463	36	8.5	36	85	3	395	44	10	21	23	1.83
22185--22497	108	2.9	107	78	10	345	45	9	21	23	1.81
22480--22595	36	3.3	36	80	12	136	46	7	17	28	1.75
22462--22574	32	3.4	32	78	13	129	47	5	18	28	1.70
22467--22595	68	1.9	68	90	3	206	48	6	16	28	1.72
24002--24054	21	2.5	21	90	0	79	56	16	24	1	1.50
24005--24070	21	3.2	21	82	6	73	57	13	27	1	1.45
24048--24115	24	2.8	25	80	14	88	60	10	26	2	1.43
24334--24367	17	1.9	18	94	5	61	55	5	32	5	1.48
26838--27314	120	4.0	119	85	3	557	37	9	13	40	1.76
26868--27055	59	3.2	58	65	17	159	35	7	13	42	1.74
28171--28226	23	2.5	21	78	18	60	37	16	3	42	1.65
36083--36123	3	13.7	3	100	0	82	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36714--37015	160	1.9	162	84	5	412	27	20	22	29	1.99
38626--38662	2	18.0	2	88	5	56	45	2	0	51	1.15
46015--46039	12	2.1	12	100	0	50	16	8	8	68	1.38
52482--52582	19	5.2	20	72	12	68	75	0	18	4	1.04
52523--52566	23	2.0	22	90	4	70	75	0	20	4	0.98
52509--52576	6	10.5	6	75	21	50	80	0	16	2	0.82
52485--52580	25	4.0	23	75	10	86	76	1	17	5	1.03
52857--52938	41	2.0	41	92	0	137	32	15	17	34	1.91
53463--53952	70	7.0	70	91	2	740	26	26	19	27	1.99
57915--58178	26	10.0	25	81	9	276	57	7	18	15	1.63
57920--58180	53	4.9	53	85	8	370	57	7	19	15	1.62
58259--58490	7	32.9	7	65	16	68	54	2	23	19	1.55
58255--58511	35	7.4	36	76	15	206	54	2	22	20	1.57
58294--58335	15	2.9	14	85	3	57	59	4	16	19	1.54
59365--59397	10	3.3	10	100	0	66	72	0	0	27	0.85
60652--60730	26	2.9	27	77	9	79	18	21	5	54	1.63
60611--60890	27	10.2	26	72	18	144	21	22	3	52	1.61
60611--60737	55	2.4	54	77	12	145	22	19	4	53	1.63
60715--60769	16	3.4	16	73	21	53	20	20	0	60	1.37
60689--60799	58	1.9	56	82	7	134	21	23	1	53	1.56
60605--60890	54	5.2	53	74	14	208	21	22	3	52	1.61
60837--60927	38	2.4	37	77	18	98	16	23	2	58	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60875--60947	27	2.7	28	87	8	107	15	24	2	57	1.51
60816--60985	66	2.6	65	84	7	202	17	22	2	57	1.51
60902--60985	39	2.2	36	85	8	114	14	23	2	59	1.47
60961--61067	22	5.0	22	76	12	87	24	19	4	51	1.66
60958--61067	44	2.6	43	79	13	136	23	19	4	52	1.64
61106--61162	30	2.0	30	89	6	91	26	12	8	52	1.67
75423--75489	35	1.9	35	90	3	109	46	4	11	37	1.61

Tables:   1

The End!