Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008943.1 Corchorus capsularis cultivar CVL-1 contig08964, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79210

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4265--4300
19
1.9
18
88
5
54
41
0
22
36
1.54
7551--7591
16
2.6
16
96
0
73
46
26
0
26
1.53
9469--9520
27
1.9
27
84
7
70
17
19
9
53
1.70
10121--10250
6
19.2
6
69
28
68
3
16
43
36
1.64
10121--10242
31
3.8
32
82
6
124
3
16
43
36
1.64
10135--10225
16
5.8
16
94
3
159
4
14
39
41
1.65
10135--10225
47
1.9
47
95
0
164
4
14
39
41
1.65
10994--11054
11
5.0
12
74
21
56
3
18
47
31
1.64
10994--11030
17
2.2
16
95
4
65
0
18
54
27
1.44
11043--11087
16
2.8
16
89
0
63
11
11
37
40
1.76
10994--11054
6
10.0
6
74
22
56
3
18
47
31
1.64
19864--19927
2
32.0
2
100
0
128
50
50
0
0
1.00
28267--28601
68
4.8
68
80
4
323
42
15
17
24
1.88
28336--28601
137
1.9
137
81
3
320
42
16
16
24
1.88
39244--39275
11
2.8
12
81
18
50
46
18
0
34
1.49
39519--39723
66
3.1
65
80
8
218
46
15
14
23
1.82
39519--39755
66
3.6
66
79
6
167
44
15
15
24
1.85
53218--53263
15
3.1
15
83
0
56
30
30
4
34
1.77
53224--53271
15
3.2
15
80
11
53
29
37
4
29
1.76
64523--64598
31
2.4
32
85
12
95
52
10
14
22
1.72
66076--66104
13
2.2
13
100
0
58
68
13
6
10
1.37

Tables:   1

The End!