Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008946.1 Corchorus capsularis cultivar CVL-1 contig08967, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46691

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3047--3086
22
1.9
21
85
10
55
55
5
2
37
1.35
3573--3616
20
2.1
21
95
4
81
63
4
13
18
1.46
6228--6302
28
2.5
29
81
14
91
37
14
30
17
1.90
6706--7068
181
2.0
181
97
0
690
36
11
17
34
1.87
9453--9512
28
2.3
27
77
11
70
31
6
15
46
1.71
9799--9823
13
1.9
13
100
0
50
64
0
0
36
0.94
9812--9851
19
2.1
19
90
0
62
57
0
0
42
0.98
12275--12345
37
1.9
37
94
0
124
38
8
16
36
1.80
14824--14894
37
1.9
37
94
0
124
38
8
16
36
1.80
17074--17384
156
2.0
155
89
4
480
33
11
10
44
1.75
23211--23267
21
2.6
22
86
5
71
24
17
7
50
1.70
23211--23351
42
3.3
43
74
9
119
24
17
5
53
1.65
23320--23459
27
5.3
27
70
17
89
19
21
3
55
1.58
23397--23462
27
2.4
28
87
7
100
21
19
1
57
1.49
23451--23558
7
14.7
7
69
8
63
18
19
3
58
1.54
23457--24040
22
26.8
22
76
5
499
20
19
5
53
1.65
23431--24024
132
4.5
132
83
7
617
21
19
5
53
1.64
24089--24181
27
3.5
27
76
16
113
13
22
5
58
1.56
27043--27106
23
2.8
23
72
6
67
3
28
0
68
1.04
27061--27102
16
2.7
16
89
10
61
0
23
0
76
0.79
28422--28496
25
2.9
26
86
6
116
44
24
13
18
1.85
35096--35233
69
2.0
69
98
0
267
30
19
17
32
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39725--39895
31
5.5
31
82
2
193
19
23
23
33
1.97
46653--46691
3
13.0
3
100
0
78
0
33
0
66
0.92

Tables:   1

The End!