genome.fa.s8954.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008954.1 Corchorus capsularis cultivar CVL-1 contig08975, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116286

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1058--1093	10	3.6	10	92	0	54	50	13	0	36	1.43
3119--3204	27	3.1	27	85	9	127	41	5	10	41	1.63
4546--4575	2	15.5	2	93	6	53	50	0	0	50	1.00
10121--10503	197	1.9	197	98	0	748	38	13	17	30	1.88
11076--11154	27	2.9	27	94	0	140	40	6	11	41	1.66
11167--11247	40	2.1	37	84	13	110	39	12	9	38	1.76
11170--11262	41	2.3	41	90	1	143	37	12	10	38	1.79
12702--12744	2	21.5	2	90	0	50	41	2	6	48	1.43
17822--17868	17	3.1	15	84	9	51	76	17	2	4	1.04
19407--19671	131	2.0	131	97	0	494	34	16	16	32	1.92
21968--22010	12	3.5	12	93	6	77	34	16	23	25	1.95
24266--24377	54	2.1	51	83	8	136	38	9	2	49	1.50
28856--28902	6	8.3	6	81	9	55	0	2	14	82	0.75
28859--28904	8	5.6	8	80	14	58	0	2	13	84	0.71
28856--28904	15	3.1	14	75	25	53	0	2	14	83	0.73
35357--35394	11	3.5	11	85	10	51	57	2	0	39	1.12
36051--36084	2	17.0	2	100	0	68	50	0	0	50	1.00
36566--36603	18	2.2	17	86	13	51	52	0	5	42	1.24
38085--38157	16	4.6	16	89	0	119	5	20	36	36	1.76
38087--38172	32	2.7	31	82	10	93	5	22	38	33	1.78
39008--39111	16	6.5	16	73	8	95	14	17	33	34	1.90
39008--39138	48	2.7	47	77	8	131	14	17	34	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41468--41515	24	2.0	24	91	0	78	41	20	29	8	1.81
41696--41734	14	2.9	14	84	3	53	46	23	17	12	1.83
56216--56544	108	3.0	108	91	0	523	32	20	19	27	1.97
58379--58433	17	3.2	17	87	10	76	20	21	21	36	1.95
60214--60499	143	2.0	143	98	0	554	40	13	19	26	1.89
74517--74552	17	2.1	18	89	5	56	19	13	33	33	1.91
78540--78644	32	3.2	32	89	2	138	54	3	19	22	1.60
78697--79303	72	8.2	71	75	15	333	57	3	21	18	1.55
78793--78875	32	2.5	33	82	1	105	56	2	22	18	1.53
78825--78925	47	2.1	47	85	3	132	58	0	22	17	1.45
78792--78954	79	2.0	81	83	8	208	57	1	22	18	1.49
78942--79121	22	8.6	22	62	23	66	58	3	19	18	1.52
78681--79302	38	16.8	37	73	15	393	57	3	21	18	1.55
79041--79100	6	9.2	6	76	16	57	60	0	21	18	1.37
78718--79188	181	2.6	186	80	12	543	57	3	20	18	1.53
79084--79270	40	4.8	41	81	7	153	57	3	21	17	1.56
79241--79332	32	2.9	32	79	9	107	53	3	27	16	1.58
78718--79253	181	2.9	178	77	11	432	57	3	20	18	1.54
79241--79331	15	5.8	16	69	19	66	53	3	26	16	1.58
84421--84448	2	14.0	2	100	0	56	50	0	0	50	1.00
85313--86220	456	2.0	457	95	1	1642	33	13	14	37	1.86
87827--87856	8	3.6	8	91	8	51	0	13	0	86	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87816--87856	17	2.3	18	87	4	57	2	14	0	82	0.76
89746--90109	184	2.0	185	90	2	581	26	23	16	34	1.95
91251--91293	21	2.0	21	100	0	86	37	20	13	27	1.91
93676--93742	29	2.4	28	82	12	75	22	32	11	32	1.90
98689--98719	11	2.8	11	95	0	53	0	9	0	90	0.46
98689--98720	16	2.1	15	94	5	55	0	9	0	90	0.45
101736--101797	31	2.0	31	83	0	79	30	16	4	48	1.67
103048--103079	16	2.0	16	93	0	55	12	9	31	46	1.73
109585--109631	23	2.0	23	95	0	85	55	8	4	31	1.49
115891--115978	33	2.7	32	96	3	167	11	17	14	56	1.66

Tables:   1

The End!