Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008955.1 Corchorus capsularis cultivar CVL-1 contig08976, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30601

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4799--4834
19
1.9
18
88
5
54
33
22
2
41
1.68
4814--4847
11
2.9
12
82
8
52
41
17
5
35
1.74
10412--10497
25
3.4
25
80
3
102
20
30
29
19
1.97
12538--12677
72
1.9
72
91
0
226
17
21
27
34
1.95
12650--12710
31
2.0
31
86
0
86
16
21
31
31
1.95
16796--16937
54
2.6
54
82
10
159
19
31
23
26
1.98
18158--18206
2
24.5
2
100
0
98
0
48
0
51
1.00
22243--22329
25
3.5
25
77
3
95
22
33
26
17
1.96
22332--22404
15
5.2
15
71
18
68
19
26
27
27
1.99
26252--26287
18
2.0
18
94
0
63
27
13
33
25
1.94
27143--27212
33
2.1
33
81
5
79
37
24
4
34
1.75
27170--27234
33
2.0
33
84
6
87
38
27
4
29
1.77
27835--27891
30
1.9
30
89
7
89
12
21
33
33
1.90
27835--27899
30
2.2
30
86
5
87
10
20
35
33
1.87

Tables:   1

The End!