Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008958.1 Corchorus capsularis cultivar CVL-1 contig08979, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38868

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2363--2431
29
2.3
30
85
7
88
50
14
10
24
1.73
5239--5266
2
14.0
2
100
0
56
0
0
50
50
1.00
6507--6534
9
3.1
9
100
0
56
46
32
0
21
1.52
13495--13535
21
2.0
21
100
0
82
36
19
24
19
1.95
17187--17228
15
2.8
15
85
7
50
73
0
14
11
1.09
26637--26670
5
6.8
5
87
12
52
14
2
0
82
0.79
26947--27025
38
2.2
35
82
8
88
43
13
16
26
1.86
27053--27091
2
20.0
2
89
5
62
46
0
0
53
1.00
31904--32098
97
2.0
97
98
0
381
42
10
21
25
1.85
38144--38179
19
1.9
18
88
5
54
36
19
2
41
1.66
38462--38836
161
2.3
160
81
4
425
29
22
20
27
1.98

Tables:   1

The End!