Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008961.1 Corchorus capsularis cultivar CVL-1 contig08982, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21592

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
673--706
16
2.2
16
89
5
52
29
2
8
58
1.43
1453--1530
27
2.9
27
86
1
93
17
20
23
38
1.93
1482--1558
27
2.8
27
84
2
82
19
15
24
40
1.90
1794--1824
16
1.9
16
93
0
53
32
9
9
48
1.69
4454--4626
51
3.4
51
87
4
240
42
8
11
37
1.71
5571--5801
55
4.3
55
84
8
325
50
6
16
26
1.70
5638--5791
47
3.1
47
79
7
164
50
7
17
24
1.71
5571--5801
102
2.2
108
87
6
330
50
6
16
26
1.70
5770--5823
18
3.2
17
75
15
58
50
7
14
27
1.70
5758--5901
72
2.0
70
84
7
184
47
6
19
25
1.74
6056--6169
27
4.2
27
77
5
113
53
1
24
20
1.55
6089--6307
74
3.0
74
88
2
318
52
2
22
22
1.59
6183--6241
27
2.1
28
84
9
77
52
3
23
20
1.61
6243--6307
25
2.4
27
82
7
89
52
3
20
24
1.61
7094--7118
2
12.5
2
100
0
50
48
0
0
52
1.00
8637--8886
67
4.0
64
84
10
342
26
19
7
47
1.75
8639--8895
58
4.3
58
83
9
352
26
19
7
47
1.74
8885--8940
16
3.8
16
67
28
52
12
32
7
48
1.68
8883--8939
26
2.2
26
96
0
105
12
31
7
49
1.67
9011--9059
25
2.0
25
91
0
80
18
20
2
59
1.48
9079--9159
42
1.9
42
89
0
126
17
22
1
59
1.45
9034--9221
36
5.2
36
77
13
174
16
23
1
57
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9079--9177
42
2.4
42
82
3
119
15
26
1
57
1.44
9060--9213
78
2.0
75
85
6
202
15
25
1
57
1.46
9247--9400
49
3.0
48
76
20
159
25
19
5
48
1.71
9310--9456
57
2.6
57
82
8
165
25
19
6
48
1.73
9322--9532
56
3.6
59
76
12
163
25
19
5
49
1.70
9545--10083
53
10.2
53
88
2
791
25
19
9
45
1.79
9545--10095
263
2.1
263
89
2
856
25
19
8
46
1.79
13472--13536
34
1.9
34
90
6
105
29
29
20
21
1.98
13506--13799
44
6.7
44
92
1
477
29
23
22
24
1.99
13809--13935
38
3.3
38
83
0
155
29
20
19
30
1.97
19676--19702
6
4.5
6
100
0
54
29
0
14
55
1.40

Tables:   1

The End!