Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008963.1 Corchorus capsularis cultivar CVL-1 contig08984, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48054

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2972--3169
104
1.9
104
94
2
353
21
26
32
18
1.97
3150--3181
12
2.7
12
90
0
55
21
43
25
9
1.82
8059--8196
71
2.0
68
89
9
210
33
16
18
31
1.93
11799--11836
12
3.2
12
92
7
60
23
26
7
42
1.81
13086--13156
37
1.9
37
91
0
115
36
15
9
38
1.81
13702--13750
3
17.3
3
79
12
59
59
0
0
40
0.98
13706--13750
8
5.8
8
80
19
51
60
0
0
40
0.97
13702--13750
17
3.1
17
82
14
68
59
0
0
40
0.98
13707--13750
11
4.2
11
88
11
74
61
0
0
38
0.96
21088--21179
46
2.0
46
95
0
166
42
15
13
29
1.84
21808--22153
30
11.7
30
81
8
327
31
17
17
34
1.93
21808--22153
62
5.9
61
83
8
351
31
17
17
34
1.93
22031--22153
31
4.0
31
89
1
185
29
17
17
36
1.92
23780--23826
18
2.6
19
87
9
64
55
21
6
17
1.64
25106--25253
72
2.1
72
93
1
253
45
10
14
29
1.78
29426--29473
22
2.2
22
81
7
53
31
12
6
50
1.65
40952--41047
11
8.3
11
72
19
79
17
10
3
68
1.31
40952--41049
12
8.3
12
71
15
55
17
11
3
68
1.32
41047--41451
220
1.8
220
90
2
652
35
20
8
35
1.82
41496--41584
11
7.5
11
70
16
63
68
3
11
16
1.33
41487--41536
21
2.3
21
86
3
64
74
0
16
10
1.08
42283--42360
41
1.9
41
89
0
120
26
16
16
39
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47151--47186
19
1.9
18
88
5
54
41
2
22
33
1.68

Tables:   1

The End!