Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008974.1 Corchorus capsularis cultivar CVL-1 contig08995, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31772

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5898--5930
12
2.8
12
90
4
50
21
3
15
60
1.48
6355--6444
42
2.2
41
82
6
101
33
8
4
53
1.52
9874--9920
21
2.2
21
78
17
53
17
44
25
12
1.84
14702--14962
135
1.9
134
83
2
335
26
25
26
21
1.99
17466--17648
7
25.7
7
66
13
61
19
20
3
57
1.54
17440--17752
42
7.6
41
75
12
189
19
19
3
56
1.57
17440--17537
28
3.5
28
85
1
144
17
20
3
59
1.51
17456--17533
14
5.6
14
78
6
95
17
20
3
57
1.55
17391--17546
28
5.6
28
72
15
99
18
20
3
57
1.56
17514--17752
22
11.4
22
76
13
229
20
19
4
56
1.59
17514--17725
64
3.3
65
81
7
258
20
19
4
55
1.59
17682--17775
40
2.3
40
85
3
118
17
22
3
57
1.54
17712--17781
19
3.6
19
69
7
59
15
24
1
58
1.45
17764--17872
34
3.4
33
75
8
109
19
24
2
53
1.58
17940--18159
26
8.3
27
69
20
126
16
19
8
55
1.65
17950--18158
53
3.9
53
92
0
346
16
19
7
56
1.64
26188--26219
2
16.0
2
93
0
55
50
0
3
46
1.17
26684--26713
13
2.2
14
94
5
53
56
0
0
43
0.99
27464--27488
6
4.2
6
100
0
50
48
36
0
16
1.46
27499--27718
39
5.7
39
95
1
363
20
35
19
24
1.95
29457--29813
156
2.3
156
80
5
384
31
16
17
34
1.92
30306--30345
21
1.9
21
94
0
71
35
30
12
22
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30928--31380
167
2.7
165
84
4
622
28
14
17
39
1.89

Tables:   1

The End!