Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008975.1 Corchorus capsularis cultivar CVL-1 contig08996, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30031

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
666--850
53
3.4
52
84
9
203
37
27
16
18
1.92
805--906
30
3.4
30
80
10
118
40
29
11
18
1.86
2537--2598
29
2.1
29
82
11
74
35
4
3
56
1.37
5408--5432
6
4.2
6
100
0
50
36
16
0
48
1.46
7386--8452
438
2.4
437
82
4
1081
31
13
12
42
1.82
10941--10978
12
3.2
12
85
14
60
57
0
0
42
0.98
13581--13659
25
3.1
26
75
15
76
17
21
6
54
1.65
13677--13730
16
3.3
16
82
5
72
25
18
1
53
1.54
13720--13891
47
3.8
46
87
6
221
26
24
4
45
1.71
13709--13852
25
6.0
25
71
11
113
25
25
4
45
1.71
13849--13910
25
2.5
25
86
0
79
25
24
4
45
1.73
13814--13960
67
2.2
68
90
2
224
25
23
3
46
1.68
13874--13963
43
2.1
43
89
2
137
26
22
3
47
1.66
14152--14284
39
3.4
38
79
10
142
28
22
2
46
1.64
15222--15247
2
13.0
2
100
0
52
50
0
0
50
1.00
17496--17544
25
1.9
26
91
4
82
63
14
14
8
1.52
17614--17659
22
2.1
22
95
0
83
54
4
19
21
1.61

Tables:   1

The End!