genome.fa.s8978.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008978.1 Corchorus capsularis cultivar CVL-1 contig08999, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  166148

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11420--11461	14	3.2	14	80	19	63	11	26	0	61	1.30
11416--11454	11	3.3	11	80	19	51	10	30	0	58	1.31
12454--13196	201	3.8	199	83	6	865	34	12	19	33	1.89
15675--15718	20	2.1	21	88	12	65	50	11	6	31	1.65
15822--15987	89	1.9	89	90	0	269	50	7	9	32	1.64
16024--16066	20	2.0	20	86	8	59	51	6	9	32	1.61
16514--16564	25	2.1	24	89	10	77	49	1	17	31	1.58
16549--16603	20	2.7	20	74	2	56	49	1	12	36	1.52
17172--17245	22	3.2	22	63	26	53	40	16	5	37	1.71
17159--17252	48	2.0	48	97	0	179	37	17	7	38	1.77
17168--17244	26	3.1	26	63	14	72	41	16	5	36	1.71
18491--18562	23	3.1	23	91	0	117	15	16	27	40	1.89
20592--20921	166	2.0	166	82	3	396	39	14	14	31	1.86
20975--21064	45	2.0	45	95	0	162	24	22	20	33	1.97
26039--26087	24	2.0	24	100	0	98	40	4	4	51	1.40
29140--29173	13	2.5	14	90	4	52	52	0	20	26	1.46
38493--38562	24	2.9	24	78	4	70	22	34	12	30	1.92
38493--38632	48	2.9	49	76	6	144	21	34	14	30	1.93
48280--48307	5	5.6	5	100	0	56	0	21	57	21	1.41
51207--51328	18	6.8	18	83	3	147	24	39	23	12	1.89
52543--52636	15	6.2	15	69	10	57	38	22	26	12	1.90
56774--56816	21	2.0	21	95	0	77	18	6	18	55	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68429--68501	38	1.9	38	97	0	137	20	16	6	56	1.63
69991--70157	43	3.9	43	84	8	207	32	7	15	43	1.75
69991--70153	86	1.9	87	88	1	247	33	7	15	42	1.75
75402--75445	22	2.0	23	86	4	63	70	2	9	18	1.24
79112--79451	172	2.0	172	97	0	635	24	21	17	36	1.95
89793--89831	14	2.9	13	92	7	53	28	0	10	61	1.28
89799--89831	7	4.7	7	100	0	66	27	0	12	60	1.32
93247--93316	19	3.3	19	68	24	59	44	15	31	8	1.77
93243--93323	27	3.3	27	61	28	72	43	19	29	7	1.78
93238--93328	45	2.0	45	100	0	182	41	17	31	8	1.80
93488--93537	24	2.1	24	100	0	100	52	16	8	24	1.70
101856--101900	23	2.0	23	100	0	90	40	8	8	42	1.67
106840--106891	27	1.9	27	96	0	95	26	5	63	3	1.34
107984--108189	102	2.0	102	100	0	412	36	17	13	32	1.89
109818--109843	1	26.0	1	100	0	52	0	100	0	0	0.00
120032--120083	27	1.9	27	96	0	95	9	28	17	44	1.80
127546--127624	31	2.5	31	81	4	97	27	12	22	36	1.91
128273--128302	2	15.0	2	100	0	60	50	0	0	50	1.00
129996--130034	18	2.1	19	90	4	62	46	2	20	30	1.64
133457--133533	37	2.1	37	95	0	136	36	11	18	33	1.87
133526--133602	39	2.0	39	92	0	127	35	12	10	41	1.78
134912--134953	14	3.1	13	75	24	50	35	35	0	28	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135587--135782	97	2.0	97	97	0	374	44	12	16	26	1.82
135690--135832	72	2.0	73	90	1	225	49	10	17	22	1.77
135915--135941	14	1.9	14	100	0	54	29	33	14	22	1.94
136955--136981	11	2.5	11	100	0	54	74	0	11	14	1.08
148050--148085	2	18.0	2	94	0	63	50	2	0	47	1.15
153359--153383	1	25.0	1	100	0	50	0	0	0	100	0.00
166124--166148	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1

The End!