Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000898.1 Corchorus capsularis cultivar CVL-1 contig00898, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 792

Length: 1320
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38


Found at i:237 original size:2 final size:2

Alignment explanation


    Indices: 230--260  Score: 53
    Period size: 2  Copynumber: 15.5  Consensus size: 2

        220 AGTCAATCAT

                                              *           
        230 TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        261 GGTTGCTGAA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52


Consensus pattern (2 bp):   
TA

Done.