genome.fa.s8980.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008980.1 Corchorus capsularis cultivar CVL-1 contig09001, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124535

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
824--861	19	2.1	17	90	9	58	0	21	0	78	0.74
824--853	9	3.2	9	90	9	51	0	23	0	76	0.78
2150--2193	20	2.1	21	91	4	72	79	18	2	0	0.83
2148--2193	15	3.0	15	84	15	67	78	19	2	0	0.86
2148--2194	5	9.0	5	78	17	51	78	19	2	0	0.85
2148--2194	11	4.5	11	86	10	71	78	19	2	0	0.85
2149--2195	6	7.7	6	78	21	53	80	17	2	0	0.80
5637--5673	20	1.9	19	89	10	58	45	5	32	16	1.70
7085--7117	17	1.9	17	100	0	66	57	18	12	12	1.64
7830--7903	36	2.1	36	100	0	148	40	8	16	35	1.78
8287--8324	12	2.8	14	80	19	53	47	18	7	26	1.76
14297--14427	62	2.1	64	91	2	212	33	11	11	43	1.77
14470--14567	22	4.5	22	78	5	63	33	16	9	40	1.80
14485--14614	44	2.9	45	79	5	131	38	17	10	33	1.85
14772--15006	22	10.9	22	70	13	112	35	16	8	39	1.79
14795--14868	38	1.9	39	86	2	105	36	16	6	40	1.75
14896--14997	44	2.3	42	82	9	132	39	11	8	40	1.73
15174--15248	2	42.5	2	71	24	62	53	1	0	45	1.08
15176--15252	12	6.9	12	77	15	69	53	1	0	45	1.08
15172--15253	21	3.7	22	82	8	105	52	1	0	46	1.08
15172--15250	10	7.7	10	76	18	74	53	1	0	45	1.08
15525--15644	22	5.5	22	73	5	100	32	14	11	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15500--15644	44	3.3	43	73	9	123	31	13	11	42	1.81
15701--15797	38	2.6	38	82	6	117	54	9	19	16	1.68
18063--18359	150	2.0	149	90	2	463	31	24	20	22	1.98
18959--18983	13	1.9	13	100	0	50	56	0	0	44	0.99
26839--26892	28	1.9	28	84	0	72	64	1	7	25	1.30
30010--30052	1	43.0	1	80	0	50	2	90	2	4	0.59
36272--36855	214	2.8	210	85	4	719	36	15	14	33	1.88
43267--43313	13	3.6	13	100	0	94	46	29	8	14	1.74
53262--53338	29	2.6	30	95	2	138	57	2	15	24	1.51
55447--55569	22	5.6	22	70	11	72	43	10	13	32	1.77
55536--55583	22	2.2	22	81	7	53	52	8	10	29	1.65
63266--63405	22	6.4	20	74	13	91	38	7	17	36	1.79
63270--63370	44	2.3	44	81	8	116	36	8	19	34	1.83
63277--63400	66	1.9	66	85	6	171	36	8	18	37	1.81
63411--63660	22	11.4	22	72	12	133	42	10	14	33	1.79
63489--63592	45	2.4	45	80	8	115	42	9	12	35	1.76
63510--63660	67	2.3	66	80	5	162	41	9	13	34	1.78
63728--63830	22	4.6	22	86	3	109	37	10	13	37	1.80
63751--64009	44	5.9	42	72	10	162	34	11	15	37	1.84
63751--63841	22	4.1	22	91	0	128	35	10	16	37	1.84
63932--64024	22	4.2	22	77	0	78	40	8	17	33	1.80
63977--64032	22	2.5	22	82	5	60	50	5	14	30	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64975--65016	22	1.9	22	90	0	66	42	9	9	38	1.70
65026--65133	22	5.2	20	69	17	69	33	12	10	44	1.75
64982--65132	62	2.5	62	90	1	223	36	11	9	42	1.74
65361--65623	22	11.9	23	74	12	144	34	15	9	40	1.79
65766--65887	22	5.5	22	77	2	93	31	12	12	43	1.79
65765--65893	44	2.9	44	74	4	134	32	13	11	41	1.81
72852--72877	10	2.6	10	100	0	52	7	7	0	84	0.77
73431--73464	3	11.3	3	100	0	68	67	0	32	0	0.91
76248--76272	13	1.9	13	100	0	50	56	0	4	40	1.18
80119--80211	45	2.1	45	91	2	152	44	12	10	32	1.77
81994--82077	44	1.9	44	85	4	116	34	9	20	35	1.85
82336--82389	16	3.3	17	75	15	60	50	1	0	48	1.11
82346--82388	12	3.5	13	84	15	56	53	0	0	46	1.00
82445--82484	20	1.9	22	85	10	57	2	40	2	55	1.27
85668--85861	97	2.0	97	97	0	370	31	11	29	27	1.91
87862--87932	37	1.9	37	85	0	97	35	19	9	35	1.85
91598--91631	2	17.5	2	93	6	61	50	0	0	50	1.00
91721--91770	26	1.9	26	91	0	82	16	10	8	66	1.44
96057--96107	20	2.6	20	90	9	79	56	1	0	41	1.10
96061--96112	14	3.5	15	82	10	54	57	1	0	40	1.10
96592--96630	19	2.1	19	100	0	78	64	0	0	35	0.94
97882--97918	17	2.2	17	95	0	65	21	37	13	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99001--99267	134	2.0	135	85	2	367	28	26	26	19	1.99
99428--99456	6	4.8	6	100	0	58	34	13	34	17	1.89
106549--106591	22	1.9	22	85	4	59	4	27	16	51	1.64
119978--120040	31	2.0	31	84	6	83	31	12	3	52	1.55
120251--120346	21	4.4	21	70	17	70	43	9	13	33	1.76
120333--120511	22	8.0	22	71	14	89	42	10	13	34	1.78
120731--120772	22	1.9	22	90	0	66	50	7	7	35	1.57
120756--120819	25	2.6	25	81	15	73	43	4	10	40	1.61
120810--120918	22	5.0	22	73	4	76	31	11	18	39	1.85
120960--121016	22	2.6	22	80	5	62	36	10	15	36	1.82
120983--121039	22	2.6	22	85	0	69	47	7	14	31	1.70
121662--121703	19	2.2	20	82	4	50	35	0	7	57	1.26

Tables:   1

The End!