Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008981.1 Corchorus capsularis cultivar CVL-1 contig09002, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78729

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11017--11103
43
2.0
43
95
0
156
41
19
6
32
1.78
14731--14772
20
2.1
20
95
0
75
19
35
9
35
1.84
14851--14934
25
3.4
25
90
3
127
34
28
0
36
1.58
15180--15229
15
3.5
15
84
10
61
30
0
12
58
1.34
15393--15472
14
5.9
14
72
18
71
32
0
10
57
1.32
15395--15471
26
3.0
26
77
9
86
32
0
10
57
1.33
15389--15526
18
7.9
18
66
16
76
29
1
8
60
1.36
15263--15572
62
5.1
58
67
21
129
31
2
9
56
1.46
17733--17792
15
4.3
15
77
16
74
55
13
0
31
1.39
17737--17792
26
2.2
26
83
6
69
55
14
0
30
1.40
17727--17822
41
2.3
41
80
7
106
54
10
1
34
1.42
18096--18141
21
2.1
22
84
4
58
39
8
39
13
1.75
18291--18434
22
6.6
21
77
5
110
43
11
13
32
1.79
18291--18435
44
3.3
44
76
6
143
42
11
13
32
1.80
18534--19092
22
25.7
22
69
15
175
37
9
15
37
1.80
18722--18806
23
3.8
22
82
4
89
36
9
15
38
1.80
18875--18963
45
2.0
45
82
4
108
32
8
16
41
1.80
19077--19184
40
2.7
40
88
0
153
47
8
10
34
1.68
20080--20119
19
2.1
19
100
0
80
15
40
10
35
1.80
23812--23851
19
2.1
19
100
0
80
35
10
40
15
1.80
24062--24099
12
3.2
12
92
0
67
52
0
0
47
1.00
24049--24099
24
2.2
22
89
6
75
52
0
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24484--24525
2
20.5
2
95
4
75
47
2
0
50
1.14
25182--25386
106
2.0
104
88
1
302
47
7
7
37
1.60
29208--29269
27
2.3
27
88
5
90
43
8
3
45
1.49
29958--29982
1
25.0
1
100
0
50
0
100
0
0
0.00
30438--30462
2
12.5
2
100
0
50
48
0
0
52
1.00
34119--34158
20
2.0
20
90
0
62
17
27
17
37
1.92
35293--35927
72
8.8
72
84
3
760
31
17
28
22
1.97
36291--36375
35
2.4
35
79
9
93
28
15
30
25
1.96
37691--37770
40
2.0
40
85
4
108
32
22
23
21
1.98
40680--40718
20
2.0
20
85
10
53
35
5
5
53
1.45
40751--40808
16
3.7
15
77
13
55
10
13
24
51
1.72
53456--53498
16
2.6
16
85
7
50
67
2
18
11
1.32
63624--63696
33
2.2
33
82
0
83
26
10
19
43
1.83
63723--63796
33
2.2
33
87
0
112
33
9
16
40
1.80
63735--63808
33
2.2
33
85
0
94
27
6
22
43
1.78
64180--64242
30
2.1
30
91
5
101
30
17
31
20
1.96
64311--64395
41
2.1
41
97
0
161
40
20
20
20
1.92
77800--77858
22
2.7
21
82
7
73
40
0
6
52
1.28
77810--77842
14
2.3
15
89
5
50
42
0
6
51
1.26
77778--77857
44
1.9
40
87
10
115
41
0
5
53
1.22

Tables:   1

The End!