Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008984.1 Corchorus capsularis cultivar CVL-1 contig09005, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41151

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
248--319
31
2.4
32
80
15
82
15
9
29
45
1.78
2551--2577
2
13.5
2
100
0
54
0
48
0
51
1.00
7900--7924
10
2.5
10
100
0
50
16
40
32
12
1.84
25487--25550
32
2.0
32
96
0
119
15
25
10
48
1.77
26412--26590
93
1.9
93
87
2
261
33
12
1
52
1.49
26699--26973
109
2.5
108
92
4
444
38
10
1
49
1.45
27896--27933
11
3.4
11
89
10
51
73
2
0
23
0.95
29829--30261
222
2.0
217
87
3
625
33
12
12
41
1.80
31257--31290
16
2.0
18
88
11
54
61
14
0
23
1.33
31373--31408
2
18.0
2
100
0
72
50
0
0
50
1.00
39452--39477
2
13.0
2
100
0
52
50
0
0
50
1.00
40635--40698
11
5.3
12
80
14
78
48
0
0
51
1.00
40632--40701
26
2.7
27
80
10
85
50
0
0
50
1.00
40616--40707
37
2.5
37
86
10
136
53
1
0
45
1.07
40633--40707
13
5.9
13
73
25
63
50
0
0
49
1.00

Tables:   1

The End!