Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008987.1 Corchorus capsularis cultivar CVL-1 contig09008, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76719

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1804--1848
13
3.5
13
90
3
74
22
13
8
55
1.65
1845--1871
6
4.5
6
100
0
54
29
0
14
55
1.40
21802--21870
35
2.1
34
86
8
97
36
18
13
31
1.89
26104--26163
25
2.4
25
78
10
61
33
3
10
53
1.51
26130--26164
13
2.8
13
95
4
63
37
0
14
48
1.44
30676--30819
7
21.7
7
71
16
110
15
25
1
56
1.47
30676--30792
27
4.6
27
70
19
81
17
24
1
56
1.50
30725--30831
19
5.2
19
73
16
88
14
23
2
59
1.48
30702--30935
46
5.1
46
76
15
216
17
23
2
57
1.52
30754--30831
38
2.0
39
90
2
122
14
24
2
58
1.48
30858--30937
26
3.2
25
74
24
87
15
18
2
63
1.41
30858--31096
22
10.9
21
73
16
157
18
18
5
56
1.60
30913--31105
43
4.5
44
77
14
170
20
18
6
55
1.63
30899--31081
65
2.8
66
84
8
223
19
18
6
56
1.62
30914--31105
21
9.0
21
75
14
135
20
18
6
55
1.64
33175--33278
36
2.9
36
95
0
190
28
14
13
43
1.83
37567--37615
23
2.1
23
92
0
80
22
6
30
40
1.78
42545--42574
14
2.1
14
93
0
51
13
10
36
40
1.78
45474--45526
26
2.0
25
82
7
61
18
24
18
37
1.94
53533--53599
27
2.4
27
75
9
73
20
23
16
38
1.92
60797--60888
47
2.0
47
93
0
157
35
21
10
31
1.88
62392--62443
25
2.1
25
100
0
104
26
7
7
57
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66075--66101
2
13.5
2
100
0
54
48
0
0
51
1.00
67377--67423
22
2.1
22
88
0
67
29
40
10
19
1.85
72142--72175
2
17.0
2
100
0
68
50
0
0
50
1.00
73389--73413
7
3.6
7
100
0
50
24
12
64
0
1.27

Tables:   1

The End!