Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008991.1 Corchorus capsularis cultivar CVL-1 contig09012, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4624
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33


Found at i:2140 original size:13 final size:13

Alignment explanation


    Indices: 2118--2153  Score: 54
    Period size: 13  Copynumber: 2.8  Consensus size: 13

       2108 AAAGATCGTC

                 *       
       2118 ATTATTATTTATT
          1 ATTATCATTTATT

            *            
       2131 GTTATCATTTATT
          1 ATTATCATTTATT

                      
       2144 ATTATCATTT
          1 ATTATCATTT

       2154 TTAAATGCAA


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  13   20  1.00

ACGTcount: A:0.28, C:0.06, G:0.03, T:0.64


Consensus pattern (13 bp):   
ATTATCATTTATT
Done.