Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008992.1 Corchorus capsularis cultivar CVL-1 contig09013, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3483
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29


Found at i:3418 original size:32 final size:32

Alignment explanation


    Indices: 3382--3442  Score: 95
    Period size: 32  Copynumber: 1.9  Consensus size: 32

       3372 AATCATTGAA

                                *           
       3382 TTTACTTAATAACACTGAATTAAGTTGATCAC
          1 TTTACTTAATAACACTGAATCAAGTTGATCAC

                      *      *           
       3414 TTTACTTAATTACACTGTATCAAGTTGAT
          1 TTTACTTAATAACACTGAATCAAGTTGAT

       3443 TACCAGTTTC


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  32   26  1.00

ACGTcount: A:0.34, C:0.15, G:0.10, T:0.41


Consensus pattern (32 bp):   
TTTACTTAATAACACTGAATCAAGTTGATCAC
Done.