Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008994.1 Corchorus capsularis cultivar CVL-1 contig09015, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3610
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31


Found at i:545 original size:27 final size:27

Alignment explanation


    Indices: 515--566  Score: 68
    Period size: 27  Copynumber: 1.9  Consensus size: 27

        505 CCCGAGTGTA

                          *            
        515 AAAAAGACCAAAATGCCCCTGGGCGCG
          1 AAAAAGACCAAAATACCCCTGGGCGCG

                *   *         *      
        542 AAAATGACTAAAATACCCTTGGGCG
          1 AAAAAGACCAAAATACCCCTGGGCG

        567 ACCCCAATGC


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  27   21  1.00

ACGTcount: A:0.38, C:0.25, G:0.23, T:0.13


Consensus pattern (27 bp):   
AAAAAGACCAAAATACCCCTGGGCGCG
Done.