Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008996.1 Corchorus capsularis cultivar CVL-1 contig09017, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9498

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61--114
21
2.6
21
87
0
81
46
0
14
38
1.45
161--228
35
1.9
35
81
0
82
38
8
16
36
1.80
5358--5389
16
2.0
16
100
0
64
56
6
37
0
1.25
5422--5463
15
2.8
15
81
0
57
16
19
4
59
1.54
5647--5735
28
3.1
28
66
15
81
20
24
22
32
1.98
5658--5746
31
3.0
30
64
15
76
19
21
23
35
1.95
5629--5746
59
2.0
58
95
1
209
20
21
22
36
1.95
5742--6065
79
4.1
79
88
0
454
29
29
15
26
1.96
6060--6168
55
2.0
55
94
0
191
24
28
11
34
1.91
6581--6762
42
4.3
42
82
4
213
23
36
13
26
1.92
6935--7028
28
3.2
28
64
14
73
20
23
21
35
1.96
6918--7036
59
2.0
59
98
0
229
20
21
21
36
1.95
8984--9028
18
2.5
18
86
10
65
55
15
2
26
1.52
8984--9022
6
6.5
6
91
8
62
56
15
0
28
1.40

Tables:   1

The End!