Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008998.1 Corchorus capsularis cultivar CVL-1 contig09019, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16856

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2009--2283
109
2.5
110
91
4
421
47
1
11
38
1.51
2421--2458
20
1.9
19
85
15
51
47
0
2
50
1.15
5954--5994
21
1.9
21
85
5
55
26
12
17
43
1.84
13609--13653
15
3.0
15
86
0
63
11
40
20
28
1.86
13738--13814
30
2.6
30
81
6
93
31
28
15
24
1.96
13788--13852
18
3.6
18
89
0
94
29
29
13
27
1.95
15588--15735
42
3.6
42
78
17
168
22
19
6
51
1.70
15606--15683
35
2.2
36
93
4
131
21
19
6
52
1.68
15641--15735
22
4.4
22
75
10
97
22
16
7
53
1.67
15761--15824
21
3.3
21
65
24
50
17
21
3
57
1.53
15704--15833
36
3.6
36
83
12
158
16
24
3
54
1.59
15835--15887
25
2.1
26
89
3
81
26
15
5
52
1.64
15861--15946
34
2.5
35
79
12
106
23
19
3
53
1.60
15982--16099
40
2.9
41
83
8
152
22
20
5
51
1.68

Tables:   1

The End!