genome.fa.s9000.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009000.1 Corchorus capsularis cultivar CVL-1 contig09021, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32239

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3256--3286	2	15.5	2	100	0	62	51	0	0	48	1.00
13550--13622	28	2.6	28	91	0	110	16	10	28	43	1.82
17376--17516	55	2.6	55	91	2	230	48	7	18	25	1.75
17733--18144	42	9.8	42	73	16	268	54	5	21	18	1.64
17701--17987	21	13.5	21	74	9	187	54	6	20	18	1.67
17751--17988	85	2.8	81	81	7	251	55	7	19	17	1.66
17699--17982	64	4.5	64	72	13	194	53	7	20	18	1.69
17828--18132	21	14.7	20	70	19	82	55	5	21	16	1.62
17960--18162	34	5.8	36	76	15	162	56	3	22	17	1.57
17964--18085	34	3.7	34	91	4	196	56	4	23	15	1.56
17699--18012	127	2.5	128	75	16	312	53	6	21	18	1.67
18074--18144	22	3.2	22	82	9	99	54	4	19	21	1.60
18065--18174	15	7.5	14	66	17	55	58	3	19	19	1.54
18102--18174	31	2.4	31	90	4	114	58	2	19	19	1.51
18140--18232	21	4.3	21	80	4	105	52	4	19	23	1.63
18152--18244	42	2.2	43	82	5	118	48	5	21	24	1.71
24042--24210	93	1.8	93	92	2	286	29	24	15	30	1.96
26236--26277	21	2.0	22	85	4	59	40	9	7	42	1.65
27735--27784	23	2.3	22	78	18	59	44	0	0	56	0.99
27741--27788	23	2.1	23	92	7	80	43	0	0	56	0.99
28868--28908	19	2.0	21	86	9	59	4	4	36	53	1.44
29576--29641	27	2.4	26	82	7	78	43	4	9	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30564--30597	2	16.5	2	93	6	59	47	0	2	50	1.16

Tables:   1

The End!