Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009001.1 Corchorus capsularis cultivar CVL-1 contig09022, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40596

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2181--2219
3
13.0
3
94
0
69
30
0
0
69
0.89
2425--2497
27
2.6
28
87
6
96
42
24
15
17
1.88
2895--3165
71
3.9
69
86
3
371
37
22
19
21
1.94
3145--3252
36
3.0
36
73
2
110
39
27
14
17
1.89
3233--3546
141
2.2
141
89
1
477
38
22
18
21
1.94
3234--3542
70
4.4
70
85
1
438
38
22
18
21
1.94
3593--3727
35
3.8
35
79
2
119
41
20
19
18
1.91
4875--4915
16
2.5
17
92
4
66
0
19
0
80
0.71
4874--4911
12
3.2
12
81
3
51
0
18
0
81
0.69
5683--5800
44
2.6
44
89
2
173
37
20
7
34
1.81
5675--5818
45
3.2
44
86
5
191
37
20
7
34
1.81
5827--5875
18
2.7
18
83
3
62
4
20
0
75
0.96
6211--6237
14
1.9
14
100
0
54
44
0
7
48
1.31
11083--11121
3
13.0
3
100
0
78
33
0
0
66
0.92
11355--11428
27
2.7
27
95
0
139
43
24
14
17
1.87
15835--15878
24
1.9
24
81
9
56
47
0
13
38
1.43
15847--15878
12
2.7
12
100
0
64
43
0
15
40
1.47
29241--29285
22
2.0
22
95
0
81
51
15
6
26
1.68
38792--38943
75
2.0
75
92
0
250
38
9
21
30
1.85
39340--39382
21
2.0
21
86
13
61
79
0
20
0
0.74
39339--39379
13
3.2
13
93
3
66
80
0
19
0
0.71

Tables:   1

The End!