Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009002.1 Corchorus capsularis cultivar CVL-1 contig09023, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59534

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5251--5299
24
2.0
24
96
0
89
48
12
4
34
1.59
5353--5388
18
1.9
19
94
5
65
2
41
0
55
1.14
7477--7513
2
18.5
2
100
0
74
48
0
0
51
1.00
7681--7755
27
2.8
27
89
0
114
44
10
4
41
1.58
13692--13717
13
2.0
13
100
0
52
46
0
0
53
1.00
14398--14466
30
2.2
30
85
10
86
21
7
14
56
1.62
17246--17284
17
2.3
17
95
0
69
30
15
5
48
1.66
17737--17784
20
2.6
18
84
15
71
39
0
2
58
1.10
19009--19045
2
18.5
2
100
0
74
51
0
0
48
1.00
21519--21544
11
2.4
11
100
0
52
0
11
0
88
0.52
23014--23070
13
4.0
15
75
15
59
49
0
0
50
1.00
36430--36466
5
7.4
5
93
0
65
21
21
0
56
1.42
37624--37796
82
2.1
85
88
8
257
45
11
17
25
1.82
40092--40208
44
2.6
43
84
6
135
42
11
13
31
1.81
40090--40282
22
8.5
22
71
5
116
43
11
14
31
1.81
40114--40215
46
2.3
43
85
10
125
39
12
14
33
1.84
40287--40345
22
2.7
22
83
0
73
38
6
15
38
1.74
40314--40363
22
2.2
23
86
10
68
42
0
22
36
1.54
40401--40633
22
10.6
22
74
9
154
34
9
15
41
1.79
40401--40458
23
2.6
22
86
7
73
32
8
15
43
1.77
40509--40613
42
2.4
43
80
12
108
33
10
18
38
1.85
44522--44557
18
2.0
18
94
0
63
55
19
0
25
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48981--49026
21
2.1
22
96
4
85
54
8
19
17
1.68
52578--52629
17
2.9
18
83
11
63
51
1
30
15
1.54
56053--56206
83
1.9
83
94
0
272
38
17
15
27
1.90
56444--56489
23
2.0
23
95
0
83
23
30
17
28
1.97
56467--56542
38
2.0
38
92
5
127
32
28
11
26
1.92
57827--57929
54
1.9
54
91
0
170
34
12
22
30
1.91
57949--58067
29
4.1
29
93
0
193
29
15
24
30
1.96
58066--58167
33
3.1
33
79
0
123
31
18
19
30
1.96
58202--58276
32
2.2
34
88
6
109
49
2
26
21
1.63
58301--58359
31
1.9
31
96
0
109
27
16
13
42
1.86
58664--58693
12
2.6
12
94
5
53
46
6
0
46
1.29

Tables:   1

The End!