Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009004.1 Corchorus capsularis cultivar CVL-1 contig09025, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47022

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1418--1515
31
3.2
30
67
16
76
39
15
16
28
1.89
1352--1515
60
2.6
61
83
7
197
36
17
17
28
1.93
1562--1720
60
2.7
59
87
2
219
29
16
18
35
1.93
3702--3748
21
2.2
22
92
3
78
36
4
4
55
1.39
3872--3931
31
1.9
31
93
0
102
33
11
15
40
1.83
3947--3976
9
3.3
9
100
0
60
90
0
0
10
0.47
3939--4000
10
6.4
10
75
17
51
75
1
1
20
0.97
23984--24025
19
2.2
19
87
8
59
47
4
4
42
1.45
36876--36914
3
13.0
3
100
0
78
33
0
0
66
0.92
42393--42465
28
2.6
28
93
0
119
63
23
4
9
1.42
43141--43178
6
6.5
6
93
6
69
50
0
15
34
1.45
43365--43613
22
11.5
22
67
14
63
33
14
10
41
1.80
43322--43472
62
2.5
62
87
1
214
34
13
9
42
1.77
43686--43745
22
2.7
22
82
5
77
38
13
13
35
1.84
43710--43982
22
12.6
22
71
10
143
36
13
8
40
1.76
43878--44000
66
1.9
64
85
6
167
35
13
9
40
1.78
43902--44030
64
2.0
66
81
3
154
36
15
8
39
1.78
44107--44186
22
3.6
22
84
0
106
32
16
10
41
1.81
44083--44196
22
5.2
22
76
6
88
32
14
10
42
1.80
44082--44196
44
2.6
44
75
5
124
32
15
10
41
1.81
44281--44376
38
2.6
37
77
9
113
56
11
18
13
1.67
45422--45472
20
2.6
19
90
3
75
49
0
23
27
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46267--46396
44
3.0
43
89
3
188
28
6
19
45
1.76
46890--46920
15
2.1
15
100
0
62
61
0
6
32
1.21

Tables:   1

The End!