Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009005.1 Corchorus capsularis cultivar CVL-1 contig09026, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39159

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
775--827
25
2.1
25
82
6
63
43
0
1
54
1.11
894--931
19
2.0
20
85
15
53
28
5
2
63
1.30
1097--1258
22
7.3
22
81
8
150
32
9
19
38
1.84
1294--1642
22
15.7
21
68
16
138
39
9
17
34
1.82
1294--2219
44
21.4
42
66
16
163
38
9
17
35
1.81
1495--1642
66
2.2
66
78
7
156
41
9
14
34
1.79
1767--2062
22
13.6
22
68
13
130
40
9
14
35
1.78
1762--1906
66
2.2
66
80
8
161
41
8
15
34
1.78
1743--2042
44
6.9
45
71
14
173
41
9
15
34
1.79
2027--2073
22
2.1
22
88
0
67
36
10
14
38
1.81
2159--2218
22
2.7
23
79
7
70
35
11
16
36
1.85
2868--2894
1
27.0
1
100
0
54
100
0
0
0
0.00
6749--6775
2
13.5
2
100
0
54
48
0
0
51
1.00
8110--8148
13
2.8
14
84
11
53
41
7
0
51
1.31
8468--8527
3
20.0
3
100
0
120
33
0
0
66
0.92
10598--10637
2
20.0
2
100
0
80
50
0
50
0
1.00
12568--12602
6
5.8
6
90
10
54
65
0
0
34
0.93
12797--12890
33
2.9
33
81
9
95
13
37
31
17
1.89
12838--12891
17
3.2
17
71
23
51
11
37
35
16
1.84
30188--30248
29
2.1
29
84
6
79
50
9
6
32
1.61
30213--30318
54
2.0
54
92
5
182
46
7
15
31
1.73
34386--34432
23
2.0
23
87
4
67
53
19
14
12
1.73

Tables:   1

The End!