genome.fa.s9006.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009006.1 Corchorus capsularis cultivar CVL-1 contig09027, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139710

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436--473	19	2.0	20	85	15	53	28	5	2	63	1.30
639--822	22	8.3	22	72	11	115	34	8	17	39	1.80
637--768	66	2.0	66	82	5	160	37	9	15	37	1.81
641--815	44	4.0	43	80	7	156	36	9	16	38	1.80
946--1163	22	9.7	22	70	17	87	41	9	12	35	1.76
1103--1174	22	3.3	22	77	13	76	38	11	11	38	1.76
2274--2345	31	2.3	31	76	4	83	59	9	5	25	1.50
9472--9520	18	2.7	18	80	0	53	26	18	30	24	1.98
9526--9580	24	2.3	24	83	0	65	23	14	29	32	1.94
9561--9595	12	2.9	12	91	0	52	17	20	40	22	1.92
14160--14186	6	4.5	6	100	0	54	51	0	14	33	1.43
16810--16914	25	4.0	25	81	11	138	39	17	11	32	1.85
17056--17103	24	2.0	24	91	0	78	43	31	10	14	1.79
18676--18713	2	19.0	2	100	0	76	50	0	0	50	1.00
24351--24377	2	13.5	2	100	0	54	51	48	0	0	1.00
24390--24414	2	12.5	2	100	0	50	0	48	0	52	1.00
24414--24439	2	13.0	2	100	0	52	50	0	0	50	1.00
26810--26835	6	4.3	6	100	0	52	46	53	0	0	1.00
26840--26872	6	5.5	6	100	0	66	15	0	36	48	1.45
28529--28587	6	10.0	6	88	3	93	0	1	49	49	1.11
35121--35192	31	2.4	31	78	2	83	33	8	16	41	1.78
36600--36673	31	2.4	31	100	0	148	28	24	10	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49226--49255	2	15.0	2	100	0	60	50	0	0	50	1.00
50769--50800	1	32.0	1	100	0	64	0	0	0	100	0.00
56728--56761	16	2.1	16	100	0	68	11	29	11	47	1.76
59475--59509	2	18.0	2	94	5	63	48	0	0	51	1.00
59741--59769	13	2.1	14	93	6	51	31	17	0	51	1.45
61119--61148	6	5.0	6	91	0	51	33	13	50	3	1.58
62370--62429	29	2.1	29	100	0	120	41	23	6	28	1.79
72483--72555	38	1.9	38	88	0	110	31	26	12	30	1.92
73911--73958	25	2.0	23	84	8	60	0	2	18	79	0.84
80770--80805	18	2.0	18	88	0	54	41	2	2	52	1.30
85072--85339	33	7.9	34	82	7	321	29	19	7	43	1.77
85084--85315	104	2.2	104	97	0	437	31	19	7	41	1.80
85084--85339	68	3.7	69	87	5	324	30	19	7	42	1.78
85362--85648	39	7.6	39	88	5	389	24	22	7	45	1.77
85362--86155	35	22.2	35	82	15	870	25	20	7	46	1.78
85622--85673	25	2.1	25	92	7	88	25	19	5	50	1.69
85362--86038	74	9.3	74	84	12	824	24	21	7	45	1.78
86011--86062	24	2.2	24	82	6	61	32	17	5	44	1.72
85976--86097	59	2.1	59	90	3	192	28	18	7	45	1.77
85941--86133	94	2.0	95	90	3	300	27	18	7	46	1.76
86286--86445	41	3.9	41	79	0	149	28	16	9	45	1.78
89577--89646	26	2.7	25	82	6	86	42	25	15	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92721--92756	19	1.9	18	88	5	54	33	22	2	41	1.68
95675--95737	31	2.0	31	100	0	126	52	9	22	15	1.72
98374--98425	27	1.9	27	92	0	86	42	23	15	19	1.89
103152--103243	24	3.8	23	79	13	96	58	11	26	3	1.48
103164--103232	24	2.9	23	87	8	102	56	13	26	4	1.55
106206--106465	131	2.0	131	91	0	421	40	16	18	24	1.91
108054--108101	24	2.0	24	100	0	96	25	41	16	16	1.89
110057--110115	30	2.0	30	100	0	118	42	10	13	33	1.78
113372--113551	70	2.5	71	92	3	299	45	11	16	26	1.81
113453--113510	29	1.9	30	89	6	91	44	8	17	29	1.78
113482--113676	41	4.7	41	77	5	196	44	11	16	26	1.83
113485--113646	82	2.0	83	85	3	220	43	12	17	26	1.84
113721--114215	41	12.0	41	88	3	672	45	9	21	23	1.80
114195--114400	36	5.9	35	85	7	219	44	6	19	29	1.76
114200--114400	68	2.9	70	81	12	236	43	6	18	30	1.77
116131--116159	2	15.0	2	92	7	51	51	0	0	48	1.00
116130--116156	13	2.1	13	100	0	54	55	0	0	44	0.99
117038--117069	2	16.0	2	100	0	64	50	0	0	50	1.00
117898--117982	42	2.0	42	88	0	125	27	27	23	22	1.99
122493--122578	45	1.9	45	88	4	129	41	22	4	31	1.74
124948--124987	18	2.2	18	90	0	62	47	15	15	22	1.82
128801--128825	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129391--129621	78	3.0	78	88	0	336	25	23	26	24	2.00
130269--130343	39	1.9	39	91	0	123	12	18	28	41	1.86
137998--138032	2	18.0	2	94	5	63	48	0	0	51	1.00

Tables:   1

The End!