Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009008.1 Corchorus capsularis cultivar CVL-1 contig09029, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29587

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8563--8601
2
19.5
2
89
0
60
51
5
0
43
1.24
9759--9829
29
2.4
29
85
4
97
32
25
16
25
1.96
12088--12117
3
10.0
3
100
0
60
33
0
0
66
0.92
12274--12355
22
3.7
22
82
8
85
40
13
9
36
1.78
12270--12355
44
1.9
45
85
2
120
40
15
9
34
1.79
16276--16316
22
1.9
21
85
5
55
34
17
4
43
1.70
22884--22923
19
2.1
19
85
0
53
7
22
37
32
1.82
23110--23178
30
2.3
31
90
9
108
37
23
10
28
1.87
27312--27377
30
2.2
31
88
2
98
31
22
13
31
1.93
27711--27744
5
6.8
5
100
0
68
82
0
17
0
0.67

Tables:   1

The End!