Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009009.1 Corchorus capsularis cultivar CVL-1 contig09030, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52495
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Found at i:8 original size:2 final size:2
Alignment explanation
Indices: 2--40 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
1 T
2 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
41 CTAGTTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4834 original size:65 final size:65
Alignment explanation
Indices: 4723--4847 Score: 173
Period size: 65 Copynumber: 1.9 Consensus size: 65
4713 TTTTTTTTTC
* * * *
4723 AAAAATGTTTTTCAAAAGAGAGTCATGGTTTTCAACAATGCTTTTTTTCAAA-ATGTTTTCTTTA
1 AAAAATGTTTATCAAAAGAAAGTCATGGTTTTAAAAAATGC-TTTTTTCAAAGATGTTTTCTTTA
4787 A
65 A
4788 AAAAATGTTTATCAAAAGAAAGTCATGGTTTTAAAAAAAATG-TTTTTTCAAAGATGTTTT
1 AAAAATGTTTATCAAAAGAAAGTCATGGTTTT--AAAAAATGCTTTTTTCAAAGATGTTTT
4848 TCAAAAATAA
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
65 40 0.75
66 7 0.13
67 6 0.11
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.41
Consensus pattern (65 bp):
AAAAATGTTTATCAAAAGAAAGTCATGGTTTTAAAAAATGCTTTTTTCAAAGATGTTTTCTTTAA
Found at i:6581 original size:16 final size:16
Alignment explanation
Indices: 6560--6671 Score: 77
Period size: 16 Copynumber: 6.9 Consensus size: 16
6550 TGATCTCTTT
*
6560 CTTCAATTCTTTAATG
1 CTTCAATTCTTCAATG
* *
6576 CTTCAACTCTTCAATT
1 CTTCAATTCTTCAATG
* * *
6592 ATTCAATTCGTCAATT
1 CTTCAATTCTTCAATG
* * *
6608 ATTCAATACTTCAATTA
1 CTTCAATTCTTCAA-TG
*
6625 CTT--ATTGCTTCAATT
1 CTTCAATT-CTTCAATG
6640 CTTCAATTAC-TCAAATG
1 CTTCAATT-CTTC-AATG
6657 CTTCAATTCTTCAAT
1 CTTCAATTCTTCAAT
6672 TTACTTCAAT
Statistics
Matches: 76, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
15 6 0.08
16 50 0.66
17 20 0.26
ACGTcount: A:0.29, C:0.22, G:0.04, T:0.45
Consensus pattern (16 bp):
CTTCAATTCTTCAATG
Found at i:6605 original size:24 final size:24
Alignment explanation
Indices: 6559--6623 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 24
6549 ATGATCTCTT
* * * *
6559 TCTTCAATTCTTTAATGCTTCAAC
1 TCTTCAATTATTCAATTCGTCAAC
*
6583 TCTTCAATTATTCAATTCGTCAAT
1 TCTTCAATTATTCAATTCGTCAAC
*
6607 TATTCAA-TACTTCAATT
1 TCTTCAATTA-TTCAATT
6624 ACTTATTGCT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 2 0.06
24 32 0.94
ACGTcount: A:0.29, C:0.22, G:0.03, T:0.46
Consensus pattern (24 bp):
TCTTCAATTATTCAATTCGTCAAC
Found at i:6736 original size:22 final size:22
Alignment explanation
Indices: 6708--6795 Score: 115
Period size: 22 Copynumber: 4.0 Consensus size: 22
6698 TCTTCCATTC
**
6708 TTCAAATATTCAATGCCTCAAT
1 TTCAAATATTCAATGTTTCAAT
*
6730 TTCAAATCTTCAATGTTTCAAT
1 TTCAAATATTCAATGTTTCAAT
6752 TTC-AATATTTCAATGTTTCAAT
1 TTCAAATA-TTCAATGTTTCAAT
* *
6774 TTCAATTCTTCAATGTTTCAAT
1 TTCAAATATTCAATGTTTCAAT
6796 GCTTCAATTT
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
21 3 0.05
22 53 0.91
23 2 0.03
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.45
Consensus pattern (22 bp):
TTCAAATATTCAATGTTTCAAT
Found at i:6749 original size:8 final size:8
Alignment explanation
Indices: 6738--6803 Score: 70
Period size: 8 Copynumber: 8.8 Consensus size: 8
6728 ATTTCAAATC
6738 TTCAATGT
1 TTCAATGT
6746 TTCAA--T
1 TTCAATGT
*
6752 TTCAATAT
1 TTCAATGT
6760 TTCAATGT
1 TTCAATGT
6768 TTCAA--T
1 TTCAATGT
6774 TTCAAT-T
1 TTCAATGT
6781 CTTCAATGT
1 -TTCAATGT
*
6790 TTCAATGC
1 TTCAATGT
6798 TTCAAT
1 TTCAAT
6804 TTCAGTTCTC
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
6 12 0.24
7 1 0.02
8 37 0.73
9 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.06, T:0.48
Consensus pattern (8 bp):
TTCAATGT
Found at i:6764 original size:44 final size:43
Alignment explanation
Indices: 6712--6795 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 43
6702 CCATTCTTCA
6712 AATATTCAATGCCTCAATTTCAAATCTTCAATGTTTCAATTTC
1 AATATTCAATGCCTCAATTTCAAATCTTCAATGTTTCAATTTC
** *
6755 AATATTTCAATGTTTCAATTTCAATTCTTCAATGTTTCAAT
1 AATA-TTCAATGCCTCAATTTCAAATCTTCAATGTTTCAAT
6796 GCTTCAATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
43 4 0.11
44 33 0.89
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.45
Consensus pattern (43 bp):
AATATTCAATGCCTCAATTTCAAATCTTCAATGTTTCAATTTC
Found at i:6772 original size:30 final size:30
Alignment explanation
Indices: 6757--7098 Score: 136
Period size: 30 Copynumber: 11.0 Consensus size: 30
6747 TCAATTTCAA
*
6757 TATTTCAATGTTTCAATTTCAATTCTTCAA
1 TATTTCAATGCTTCAATTTCAATTCTTCAA
* * *
6787 TGTTTCAATGCTTCAATTTCAGTTCTCCAAA
1 TATTTCAATGCTTCAATTTCAATTCTTC-AA
* * *
6818 TTCAGTCCTTCAATGCTCCAATTTCAATTATTAAAA
1 -T-A-T--TTCAATGCTTCAATTTCAATTCTT-CAA
* * *
6854 TTCAATCCTCCAGTAG-TTGAATTTCAATTCTTCAA
1 -T--AT--TTCAAT-GCTTCAATTTCAATTCTTCAA
* *
6889 TGTTTCAATGCTTCAATTTCAAATTCCTCAA
1 TATTTCAATGCTTCAATTTC-AATTCTTCAA
*
6920 -A-TTCAATCCTTCAATGTCTCAA-T-TTCAA
1 TATTTCAATGCTTCAAT-T-TCAATTCTTCAA
*
6948 T-TCTTCAA--ATTCAATCCTTCAATAT-TTCAA
1 TAT-TTCAATGCTTCAAT--TTCAAT-TCTTCAA
* * *
6978 TATGTCAATTC-TCAATTTAAATTCTTCAA
1 TATTTCAATGCTTCAATTTCAATTCTTCAA
** * *
7007 TGCTTCAATGTTTCAATTTTCCATTCTTCAA
1 TATTTCAATGCTTCAA-TTTCAATTCTTCAA
** *
7038 TGCTTCAAT--TTCAATTTCAACTCTTCAA
1 TATTTCAATGCTTCAATTTCAATTCTTCAA
*
7066 -A-TTCAATTCTTCAATGCTTCAATTTACTTCAA
1 TATTTCAATGCTTCAAT--TTCAA-TT-CTTCAA
7098 T
1 T
7099 GATCTAGGGT
Statistics
Matches: 239, Mismatches: 41, Indels: 61
0.70 0.12 0.18
Matches are distributed among these distances:
26 6 0.03
28 33 0.14
29 37 0.15
30 64 0.27
31 41 0.17
32 8 0.03
34 2 0.01
35 2 0.01
36 44 0.18
37 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.05, T:0.43
Consensus pattern (30 bp):
TATTTCAATGCTTCAATTTCAATTCTTCAA
Found at i:6807 original size:22 final size:20
Alignment explanation
Indices: 6725--6807 Score: 94
Period size: 22 Copynumber: 3.8 Consensus size: 20
6715 ATTCAATGCC
6725 TCAATTTCAAATCTTCAATGTT
1 TCAATTTC-AAT-TTCAATGTT
6747 TCAATTTCAATATTTCAATGTT
1 TCAATTTC-A-ATTTCAATGTT
6769 TCAATTTCAATTCTTCAATGTT
1 TCAATTTCAA-T-TTCAATGTT
6791 TCAATGCTTCAATTTCA
1 TCAAT--TTCAATTTCA
6808 GTTCTCCAAA
Statistics
Matches: 56, Mismatches: 0, Indels: 10
0.85 0.00 0.15
Matches are distributed among these distances:
20 1 0.02
21 2 0.04
22 45 0.80
23 3 0.05
24 5 0.09
ACGTcount: A:0.30, C:0.18, G:0.05, T:0.47
Consensus pattern (20 bp):
TCAATTTCAATTTCAATGTT
Found at i:6830 original size:36 final size:36
Alignment explanation
Indices: 6704--7090 Score: 251
Period size: 36 Copynumber: 10.9 Consensus size: 36
6694 TCTTTCTTCC
6704 ATTCTTCAAATATTCAATGCC-TCAAT--TTCAAATCTTCA
1 ATTCTTC-AA-ATTCAAT-CCTTCAATGCTTC-AAT-TTCA
* ** *
6742 ATGT-TTCAATTTCAATATTTCAATGTTTCAATTTCA
1 AT-TCTTCAAATTCAATCCTTCAATGCTTCAATTTCA
*
6778 ATTCTTC-AA-T--GT--TTCAATGCTTCAATTTCA
1 ATTCTTCAAATTCAATCCTTCAATGCTTCAATTTCA
* * * *
6808 GTTCTCCAAATTCAGTCCTTCAATGCTCCAATTTCA
1 ATTCTTCAAATTCAATCCTTCAATGCTTCAATTTCA
* * * * *
6844 ATTATTAAAATTCAATCCTCCAGTAG-TTGAATTTCA
1 ATTCTTCAAATTCAATCCTTCAAT-GCTTCAATTTCA
*
6880 ATTCTTC-AA-T--GT--TTCAATGCTTCAATTTCAA
1 ATTCTTCAAATTCAATCCTTCAATGCTTCAATTTC-A
*
6911 ATTCCTCAAATTCAATCCTTCAATG-TCTCAATTTCA
1 ATTCTTCAAATTCAATCCTTCAATGCT-TCAATTTCA
**
6947 ATTCTTCAAATTCAATCCTTCAATATTTCAATATGTCA
1 ATTCTTCAAATTCAATCCTTCAATGCTTCAAT-T-TCA
* * *
6985 ATTC-TCAATTTAAATTCTTCAATGCTTCAATGTTTCA
1 ATTCTTCAAATTCAATCCTTCAATGCTTCAA--TTTCA
** *
7022 ATT-TTCCATTCTTCAATGCTTCAAT--TTCAATTTCA
1 ATTCTT-CA-AATTCAATCCTTCAATGCTTCAATTTCA
* *
7057 ACTCTTCAAATTCAATTCTTCAATGCTTCAATTT
1 ATTCTTCAAATTCAATCCTTCAATGCTTCAATTT
7091 ACTTCAATGA
Statistics
Matches: 276, Mismatches: 41, Indels: 66
0.72 0.11 0.17
Matches are distributed among these distances:
29 1 0.00
30 34 0.12
31 9 0.03
32 5 0.02
33 1 0.00
34 17 0.06
35 14 0.05
36 107 0.39
37 56 0.20
38 18 0.07
39 14 0.05
ACGTcount: A:0.30, C:0.22, G:0.05, T:0.43
Consensus pattern (36 bp):
ATTCTTCAAATTCAATCCTTCAATGCTTCAATTTCA
Found at i:6889 original size:8 final size:8
Alignment explanation
Indices: 6876--7089 Score: 87
Period size: 8 Copynumber: 28.9 Consensus size: 8
6866 GTAGTTGAAT
6876 TTCAATTC
1 TTCAATTC
6884 TTCAATGT-
1 TTCAAT-TC
*
6892 TTCAATGC
1 TTCAATTC
6900 TTCAA-T-
1 TTCAATTC
6906 TTCAAATTC
1 TTC-AATTC
* *
6915 CTCAA--A
1 TTCAATTC
*
6921 TTCAATCC
1 TTCAATTC
6929 TTCAATGTC
1 TTCAAT-TC
6938 -TCAA-T-
1 TTCAATTC
6943 TTCAATTC
1 TTCAATTC
*
6951 TTCAA--A
1 TTCAATTC
*
6957 TTCAATCC
1 TTCAATTC
6965 TTCAATAT-
1 TTCAAT-TC
6973 TTCAATAT-
1 TTCAAT-TC
*
6981 GTCAATTC
1 TTCAATTC
6989 -TCAA-T-
1 TTCAATTC
*
6994 TTAAATTC
1 TTCAATTC
*
7002 TTCAATGC
1 TTCAATTC
7010 TTCAATGT-
1 TTCAAT-TC
7018 TTCAATT-
1 TTCAATTC
*
7025 TTCCATTC
1 TTCAATTC
*
7033 TTCAATGC
1 TTCAATTC
7041 TTCAA-T-
1 TTCAATTC
7047 TTCAA-T-
1 TTCAATTC
*
7053 TTCAACTC
1 TTCAATTC
*
7061 TTCAA--A
1 TTCAATTC
7067 TTCAATTC
1 TTCAATTC
*
7075 TTCAATGC
1 TTCAATTC
7083 TTCAATT
1 TTCAATT
7090 TACTTCAATG
Statistics
Matches: 159, Mismatches: 23, Indels: 48
0.69 0.10 0.21
Matches are distributed among these distances:
6 37 0.23
7 17 0.11
8 101 0.64
9 4 0.03
ACGTcount: A:0.30, C:0.22, G:0.04, T:0.44
Consensus pattern (8 bp):
TTCAATTC
Found at i:6945 original size:67 final size:66
Alignment explanation
Indices: 6826--6955 Score: 172
Period size: 67 Copynumber: 2.0 Consensus size: 66
6816 AATTCAGTCC
* * *
6826 TTCAATGCTCCAATTTCAATTATTAAAATTCAATCCTCCAGTAGTTGAATTTCAATTCTTCAATG
1 TTCAATGCTCCAATTTCAATTACTAAAATTCAATCCTCCAATAGTTCAATTTCAATTCTTCAATG
6891 T
66 T
* * * *
6892 TTCAATGCTTCAATTTCAAATTCCTCAAATTCAATCCTTCAAT-GTCTCAATTTCAATTCTTCAA
1 TTCAATGCTCCAATTTC-AATTACTAAAATTCAATCCTCCAATAGT-TCAATTTCAATTCTTCAA
6956 ATTCAATCCT
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
66 18 0.33
67 37 0.67
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (66 bp):
TTCAATGCTCCAATTTCAATTACTAAAATTCAATCCTCCAATAGTTCAATTTCAATTCTTCAATG
T
Found at i:7158 original size:21 final size:22
Alignment explanation
Indices: 7133--7181 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 22
7123 TTCTCCATTA
7133 TTCAATGCCTCAATTTCAAT-T
1 TTCAATGCCTCAATTTCAATGT
*
7154 TTCAATGCTTCAATTTCAATGT
1 TTCAATGCCTCAATTTCAATGT
7176 TTCAAT
1 TTCAAT
7182 TTCAGTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 19 0.73
22 7 0.27
ACGTcount: A:0.29, C:0.20, G:0.06, T:0.45
Consensus pattern (22 bp):
TTCAATGCCTCAATTTCAATGT
Found at i:7170 original size:14 final size:14
Alignment explanation
Indices: 7147--7482 Score: 88
Period size: 14 Copynumber: 23.4 Consensus size: 14
7137 ATGCCTCAAT
7147 TTCAATTTTCAATGC
1 TTCAA-TTTCAATGC
*
7162 TTCAATTTCAATGT
1 TTCAATTTCAATGC
* **
7176 TTCAATTTCAGTTT
1 TTCAATTTCAATGC
* *
7190 TTCAAATTCAATTC
1 TTCAATTTCAATGC
7204 TTCAATGTTTCAAT--
1 TTCAA--TTTCAATGC
7218 TTCAATGTATCAATGC
1 TTCAAT-T-TCAATGC
* *
7234 TTCAATTTTAATTC
1 TTCAATTTCAATGC
**
7248 TTGGATGGTTCAAT--
1 TTCAAT--TTCAATGC
** *
7262 TTCCGTTCTTCAACGC
1 TT-CAAT-TTCAATGC
*
7278 TTCAATTTCAATTC
1 TTCAATTTCAATGC
7292 TTCAATGTT---T-C
1 TTCAAT-TTCAATGC
*
7303 TTTCAATTCTTAAATGC
1 -TTCAA-T-TTCAATGC
* **
7320 TTCAATCTCAATAT
1 TTCAATTTCAATGC
*
7334 TTCAATGTTTCAA--A
1 TTCAA--TTTCAATGC
* *
7348 TTCAGTTCTTCAATGT
1 TTCA-AT-TTCAATGC
7364 TTCAATGTATCAATGC
1 TTCAAT-T-TCAATGC
* **
7380 TTCAATTTCCATTT
1 TTCAATTTCAATGC
*
7394 TTCAACGCTTCAAT--
1 TTCAA--TTTCAATGC
* *
7408 TGCAATTTCAATTC
1 TTCAATTTCAATGC
* *
7422 TTCAAATTCAATTC
1 TTCAATTTCAATGC
*
7436 TTCAATGCTCTAAT--
1 TTCAAT-TTC-AATGC
7450 TTCAATTTCAATGC
1 TTCAATTTCAATGC
*
7464 TTCAATTTCAATTC
1 TTCAATTTCAATGC
7478 TTCAA
1 TTCAA
7483 ATTCCAAATG
Statistics
Matches: 243, Mismatches: 45, Indels: 67
0.68 0.13 0.19
Matches are distributed among these distances:
11 1 0.00
12 16 0.07
13 7 0.03
14 146 0.60
15 18 0.07
16 54 0.22
17 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.46
Consensus pattern (14 bp):
TTCAATTTCAATGC
Found at i:7207 original size:22 final size:22
Alignment explanation
Indices: 7189--7368 Score: 136
Period size: 22 Copynumber: 8.3 Consensus size: 22
7179 AATTTCAGTT
7189 TTTCAAATTCAATTCTTCAATG
1 TTTCAAATTCAATTCTTCAATG
* *
7211 TTTCAATTTCAATGT-ATCAATG
1 TTTCAAATTCAAT-TCTTCAATG
* * * **
7233 CTTCAATTTTAATTCTTGGATG
1 TTTCAAATTCAATTCTTCAATG
* * ** *
7255 GTTCAATTTCCGTTCTTCAACG
1 TTTCAAATTCAATTCTTCAATG
* *
7277 CTTCAATTTCAATTCTTCAATG
1 TTTCAAATTCAATTCTTCAATG
* *
7299 TTTC--TTTCAATTCTTAAATG
1 TTTCAAATTCAATTCTTCAATG
*
7319 CTTC-AATCTCAATAT-TTCAATG
1 TTTCAAAT-TCAAT-TCTTCAATG
*
7341 TTTCAAATTCAGTTCTTCAATG
1 TTTCAAATTCAATTCTTCAATG
7363 TTTCAA
1 TTTCAA
7369 TGTATCAATG
Statistics
Matches: 126, Mismatches: 25, Indels: 14
0.76 0.15 0.08
Matches are distributed among these distances:
20 18 0.14
21 3 0.02
22 100 0.79
23 5 0.04
ACGTcount: A:0.27, C:0.19, G:0.08, T:0.46
Consensus pattern (22 bp):
TTTCAAATTCAATTCTTCAATG
Found at i:7238 original size:44 final size:44
Alignment explanation
Indices: 7190--7568 Score: 201
Period size: 44 Copynumber: 8.9 Consensus size: 44
7180 ATTTCAGTTT
*
7190 TTCAAATTCAATTCTTCAATGTTTCAATTTCAATGT-ATCAATGC
1 TTCAAATTCAATTCTTCAATGTTTCAATTTCAAT-TCTTCAATGC
* * ** * ** *
7234 TTCAATTTTAATTCTTGGATGGTTCAATTTCCGTTCTTCAACGC
1 TTCAAATTCAATTCTTCAATGTTTCAATTTCAATTCTTCAATGC
* *
7278 TTCAATTTCAATTCTTCAATGTTTC--TTTCAATTCTTAAATGC
1 TTCAAATTCAATTCTTCAATGTTTCAATTTCAATTCTTCAATGC
* *
7320 TTC-AATCTCAATAT-TTCAATGTTTCAAATTCAGTTCTTCAATG-
1 TTCAAAT-TCAAT-TCTTCAATGTTTCAATTTCAATTCTTCAATGC
* * * * *
7363 -T----TTCAATGT-ATCAATGCTTCAATTTCCATTTTTCAACGC
1 TTCAAATTCAAT-TCTTCAATGTTTCAATTTCAATTCTTCAATGC
*
7402 TTC-AATTGCAA-T-TTCAAT-TCTTCAAATTCAATTCTTCAATGC
1 TTCAAATT-CAATTCTTCAATGT-TTCAATTTCAATTCTTCAATGC
* *
7444 -TCTAATTTCAA-T-TTCAATGCTTCAATTTCAATTCTTCAAAT--
1 TTC-AAATTCAATTCTTCAATGTTTCAATTTCAATTCTTC-AATGC
* * * * * *
7485 TCCAAATGTCAATGCTCCAATACTTT-AATTTCAATGCTTAAAATGC
1 TTCAAAT-TCAATTCTTCAAT-GTTTCAATTTCAATTCTT-CAATGC
** * * *
7531 TTCAGTTTCAACAT-TTCAATGCTTCAATTTCAACTCTT
1 TTCAAATTCAA-TTCTTCAATGTTTCAATTTCAATTCTT
7569 GAAATTCAAT
Statistics
Matches: 253, Mismatches: 56, Indels: 51
0.70 0.16 0.14
Matches are distributed among these distances:
38 28 0.11
39 1 0.00
40 1 0.00
41 7 0.03
42 88 0.35
43 10 0.04
44 92 0.36
45 22 0.09
46 4 0.02
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.44
Consensus pattern (44 bp):
TTCAAATTCAATTCTTCAATGTTTCAATTTCAATTCTTCAATGC
Found at i:7418 original size:20 final size:21
Alignment explanation
Indices: 7278--7476 Score: 99
Period size: 22 Copynumber: 9.3 Consensus size: 21
7268 TCTTCAACGC
* *
7278 TTCAATTTCAATTCTTCAATGT
1 TTCAATTTCAATGCTTCAA-AT
*
7300 TTC--TTTCAATTCTT-AAAT
1 TTCAATTTCAATGCTTCAAAT
* ** *
7318 GCTTCAATCTCAATATTTCAATGT
1 --TTCAATTTCAATGCTTCAA-AT
* * * *
7342 TTCAAATTCAGTTCTTCAATGT
1 TTCAATTTCAATGCTTCAA-AT
7364 TTCAATGTATCAATGCTTC-AAT
1 TTCAAT-T-TCAATGCTTCAAAT
* *
7386 TTCCATTTTTCAACGCTTC-AAT
1 TT-CA-ATTTCAATGCTTCAAAT
* *
7408 TGCAATTTCAATTCTTCAAA-
1 TTCAATTTCAATGCTTCAAAT
*
7428 TTCAATTCTTCAATGC-TCTAAT
1 TTCAA-T-TTCAATGCTTCAAAT
7450 TTCAATTTCAATGCTTC-AAT
1 TTCAATTTCAATGCTTCAAAT
7470 TTCAATT
1 TTCAATT
7477 CTTCAAATTC
Statistics
Matches: 139, Mismatches: 23, Indels: 32
0.72 0.12 0.16
Matches are distributed among these distances:
18 1 0.01
19 2 0.01
20 46 0.33
21 12 0.09
22 61 0.44
23 7 0.05
24 10 0.07
ACGTcount: A:0.29, C:0.20, G:0.06, T:0.46
Consensus pattern (21 bp):
TTCAATTTCAATGCTTCAAAT
Found at i:7440 original size:42 final size:42
Alignment explanation
Indices: 7373--7482 Score: 150
Period size: 42 Copynumber: 2.6 Consensus size: 42
7363 TTTCAATGTA
* *
7373 TCAATGCTTCAATTTCCATTTTTCAACGCT-TCAATTGCAATT
1 TCAATGCTTCAATTTCAATTCTTCAACGCTCT-AATTGCAATT
* * * *
7415 TCAATTCTTCAAATTCAATTCTTCAATGCTCTAATTTCAATT
1 TCAATGCTTCAATTTCAATTCTTCAACGCTCTAATTGCAATT
7457 TCAATGCTTCAATTTCAATTCTTCAA
1 TCAATGCTTCAATTTCAATTCTTCAA
7483 ATTCCAAATG
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
42 58 0.98
43 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.05, T:0.44
Consensus pattern (42 bp):
TCAATGCTTCAATTTCAATTCTTCAACGCTCTAATTGCAATT
Found at i:7441 original size:28 final size:28
Alignment explanation
Indices: 7373--7585 Score: 109
Period size: 28 Copynumber: 7.4 Consensus size: 28
7363 TTTCAATGTA
* * *
7373 TCAATGCTTCAATTTCCATTTTTCAACGCT
1 TCAATGCTTCAATTTCAATTCTTCAA--AT
*
7403 TCAAT--TGCAATTTCAATTCTTCAAAT
1 TCAATGCTTCAATTTCAATTCTTCAAAT
* * *
7429 TCAATTCTTCAATGCTCTAA-T-TTCAATT
1 TCAATGCTTCAAT-TTC-AATTCTTCAAAT
7457 TCAATGCTTCAATTTCAATTCTTCAAAT
1 TCAATGCTTCAATTTCAATTCTTCAAAT
* * * *
7485 TCCAAATG--TCAATGCTCCAATACTTTAATT
1 T-C-AATGCTTCAAT--TTCAATTCTTCAAAT
* *
7515 TCAATGCTTAAAATGCTTC-AGT-TTCAACATT
1 TCAATGCTT-CAAT--TTCAATTCTTCAA-A-T
* *
7546 TCAATGCTTCAATTTCAACTCTTGAAAT
1 TCAATGCTTCAATTTCAATTCTTCAAAT
*
7574 TCAATTCTTCAA
1 TCAATGCTTCAA
7586 GGCTCCAATT
Statistics
Matches: 142, Mismatches: 24, Indels: 36
0.70 0.12 0.18
Matches are distributed among these distances:
26 8 0.06
27 3 0.02
28 70 0.49
29 12 0.08
30 32 0.23
31 17 0.12
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.41
Consensus pattern (28 bp):
TCAATGCTTCAATTTCAATTCTTCAAAT
Found at i:7497 original size:42 final size:42
Alignment explanation
Indices: 7373--7575 Score: 126
Period size: 42 Copynumber: 4.7 Consensus size: 42
7363 TTTCAATGTA
* * * *
7373 TCAATGCTTCAATTTCCATTTTTCAACGCTT-CAATTG-CAATT
1 TCAATGCTTCAATTTCAATTCTTCAA--ATTCCAAATGTCAATT
* * * * *
7415 TCAATTCTTCAAATTCAATTCTTC-AATGCTCTAATTTCAATT
1 TCAATGCTTCAATTTCAATTCTTCAAATTC-CAAATGTCAATT
7457 TCAATGCTTCAATTTCAATTCTTCAAATTCCAAATGTCAATGCT
1 TCAATGCTTCAATTTCAATTCTTCAAATTCCAAATGTCAAT--T
* * * * * * * *
7501 CCAATACTTTAATTTCAATGCTTAAAATGCTTC-AGTTTCAACATT
1 TCAATGCTTCAATTTCAATTCTTCAAAT--TCCAAATGTC-A-ATT
* *
7546 TCAATGCTTCAATTTCAACTCTTGAAATTC
1 TCAATGCTTCAATTTCAATTCTTCAAATTC
7576 AATTCTTCAA
Statistics
Matches: 122, Mismatches: 29, Indels: 19
0.72 0.17 0.11
Matches are distributed among these distances:
39 1 0.01
41 4 0.03
42 56 0.46
43 5 0.04
44 24 0.20
45 27 0.22
46 3 0.02
47 2 0.02
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.41
Consensus pattern (42 bp):
TCAATGCTTCAATTTCAATTCTTCAAATTCCAAATGTCAATT
Found at i:11867 original size:30 final size:31
Alignment explanation
Indices: 11833--11897 Score: 105
Period size: 30 Copynumber: 2.1 Consensus size: 31
11823 TGAGGTAATC
*
11833 CTAACTTTGCAAAATCGGCTC-AATCAGTCT
1 CTAACGTTGCAAAATCGGCTCAAATCAGTCT
*
11863 CTAACGTTGCAAAATCGGTTCAAATCAGTCT
1 CTAACGTTGCAAAATCGGCTCAAATCAGTCT
11894 CTAA
1 CTAA
11898 TGTCAATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 19 0.59
31 13 0.41
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (31 bp):
CTAACGTTGCAAAATCGGCTCAAATCAGTCT
Found at i:12158 original size:30 final size:31
Alignment explanation
Indices: 12124--12188 Score: 96
Period size: 30 Copynumber: 2.1 Consensus size: 31
12114 TGAGGTAATC
* *
12124 CTAACTTTGCAAAATCGGCTC-AATTAGTCT
1 CTAACGTTGCAAAATCGGCTCAAATCAGTCT
*
12154 CTAACGTTGCAAAATCGGTTCAAATCAGTCT
1 CTAACGTTGCAAAATCGGCTCAAATCAGTCT
12185 CTAA
1 CTAA
12189 TGTCAATTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
30 19 0.61
31 12 0.39
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (31 bp):
CTAACGTTGCAAAATCGGCTCAAATCAGTCT
Found at i:12292 original size:291 final size:293
Alignment explanation
Indices: 11743--12349 Score: 1038
Period size: 291 Copynumber: 2.1 Consensus size: 293
11733 ACGTTACGAC
* *
11743 AGAAACCATGATTAAAAAAAAGGGAAAAAAAACTATCCAATCAAAAAGGCCCATTTTTCATCCCT
1 AGAAACCATGATTAAAAAAAAGGGAAAAAAAACTATCCAATCAAAAAGACCCATTTGTCATCCCT
11808 CATGAAAAGTAATCATGAGGTAATCCTAACTTTGCAAAATCGGCTCAATCAGTCTCTAACGTTGC
66 CATGAAAAGTAATCATGAGGTAATCCTAACTTTGCAAAATCGGCTCAATCAGTCTCTAACGTTGC
11873 AAAATCGGTTCAAATCAGTCTCTAATGTCAATTTAAGTCGCAAACGTTTTGGGGTTTATTAGGAT
131 AAAATCGGTTCAAATCAGTCTCTAATGTCAATTTAAGTCGCAAACGTTTTGGGGTTTATTAGGAT
11938 GTCAATTTGACGCCAGTGACTTAATTAACCAAATTAAATGGTTACAACCTTATTTAAGATTTTTG
196 GTCAATTTGACGCCAGTGACTTAATTAACCAAATTAAATGGTTACAACCTTATTTAAGATTTTTG
*
12003 TAAACATTAATGACCAATTTGAACATTTATCCA
261 TAAACATTAATGACCAATTTGAAAATTTATCCA
* * *
12036 AGAAACCATGATTAAAAAAAA-GG-AAAAAAACTATCCACTCGAAAAGACCCATTTGTCATCCTT
1 AGAAACCATGATTAAAAAAAAGGGAAAAAAAACTATCCAATCAAAAAGACCCATTTGTCATCCCT
* *
12099 TATGAAAAGTAATCATGAGGTAATCCTAACTTTGCAAAATCGGCTCAATTAGTCTCTAACGTTGC
66 CATGAAAAGTAATCATGAGGTAATCCTAACTTTGCAAAATCGGCTCAATCAGTCTCTAACGTTGC
12164 AAAATCGGTTCAAATCAGTCTCTAATGTCAATTTAAGTCGCAAACGTTTTGGGGTTTATTAGGAT
131 AAAATCGGTTCAAATCAGTCTCTAATGTCAATTTAAGTCGCAAACGTTTTGGGGTTTATTAGGAT
**** *
12229 GTCAATTTGACGCCAGTGACTTAATTAACCAAATTAAATGGTTAGGTTCTTATTTCAGATTTTTG
196 GTCAATTTGACGCCAGTGACTTAATTAACCAAATTAAATGGTTACAACCTTATTTAAGATTTTTG
**
12294 TAAATGTTAATGACCAATTTGAAAATTTATCCA
261 TAAACATTAATGACCAATTTGAAAATTTATCCA
*
12327 AGAAACCATAAAATTAAAAAAAA
1 AGAAACCAT--GATTAAAAAAAA
12350 AAGAGAGAAG
Statistics
Matches: 296, Mismatches: 16, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
291 262 0.89
292 2 0.01
293 32 0.11
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (293 bp):
AGAAACCATGATTAAAAAAAAGGGAAAAAAAACTATCCAATCAAAAAGACCCATTTGTCATCCCT
CATGAAAAGTAATCATGAGGTAATCCTAACTTTGCAAAATCGGCTCAATCAGTCTCTAACGTTGC
AAAATCGGTTCAAATCAGTCTCTAATGTCAATTTAAGTCGCAAACGTTTTGGGGTTTATTAGGAT
GTCAATTTGACGCCAGTGACTTAATTAACCAAATTAAATGGTTACAACCTTATTTAAGATTTTTG
TAAACATTAATGACCAATTTGAAAATTTATCCA
Found at i:16026 original size:44 final size:44
Alignment explanation
Indices: 15976--16063 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
15966 CTATACATAT
*
15976 TAGATCTAAATAATCCAATACCTTCAATCAAACCCAAAATCTCC
1 TAGATCTAAATAATCCAATACCTTCAAGCAAACCCAAAATCTCC
*
16020 TAGATCTAAATAATCCAATACCTTCAAGCAAACCCAACATCTCC
1 TAGATCTAAATAATCCAATACCTTCAAGCAAACCCAAAATCTCC
16064 AGCTTTTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.42, C:0.31, G:0.03, T:0.24
Consensus pattern (44 bp):
TAGATCTAAATAATCCAATACCTTCAAGCAAACCCAAAATCTCC
Found at i:18690 original size:2 final size:2
Alignment explanation
Indices: 18685--18721 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
18675 TCTGTGTGTG
* *
18685 TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA CA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
18722 TTAAAGGGGG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:20919 original size:33 final size:32
Alignment explanation
Indices: 20882--20988 Score: 126
Period size: 33 Copynumber: 3.2 Consensus size: 32
20872 CGCTAGGCGA
* *
20882 TGGCCGGTTG-TGGCCGGACATGTCCATGTCGCG
1 TGGCCGG-TGATGGCCGGGCATCTCCA-GTCGCG
20915 TGGCCGGTGATGGCCGGGCATCTCCGAGTCGCG
1 TGGCCGGTGATGGCCGGGCATCTCC-AGTCGCG
* * *
20948 TGGCCGGTGTTGGCCGGGCTTCTCCAAGTCGCA
1 TGGCCGGTGATGGCCGGGCATCTCC-AGTCGCG
20981 TGGCCGGT
1 TGGCCGGT
20989 CACTCGCGCC
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
32 2 0.03
33 63 0.95
34 1 0.02
ACGTcount: A:0.08, C:0.29, G:0.40, T:0.22
Consensus pattern (32 bp):
TGGCCGGTGATGGCCGGGCATCTCCAGTCGCG
Found at i:24767 original size:2 final size:2
Alignment explanation
Indices: 24760--24796 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
24750 TCGTTGCATT
24760 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24797 CAGAATCTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:25982 original size:14 final size:14
Alignment explanation
Indices: 25963--25990 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25953 CATAATATAA
25963 GGCAAAATATTGGT
1 GGCAAAATATTGGT
25977 GGCAAAATATTGGT
1 GGCAAAATATTGGT
25991 AACAACACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.29, T:0.29
Consensus pattern (14 bp):
GGCAAAATATTGGT
Found at i:27061 original size:3 final size:3
Alignment explanation
Indices: 27053--27093 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
27043 TAGTTCTGCC
** *
27053 TCT TCT TCT TCT TCT TCT TCT TCT TGG TCT TCT CCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
27094 GACGTTCTCT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.34, G:0.05, T:0.61
Consensus pattern (3 bp):
TCT
Found at i:29750 original size:18 final size:18
Alignment explanation
Indices: 29709--29771 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 18
29699 ATAATAAAAC
* *
29709 AAAAACTACCCATCATAAA
1 AAAAACTACCAAT-TTAAA
*
29728 TAAAACTACCAATTTAAA
1 AAAAACTACCAATTTAAA
29746 AAAAACTA-CATATTTTAAA
1 AAAAACTACCA-A-TTTAAA
29765 AAAAACT
1 AAAAACT
29772 GTCATAAATC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
17 2 0.05
18 12 0.32
19 24 0.63
ACGTcount: A:0.59, C:0.17, G:0.00, T:0.24
Consensus pattern (18 bp):
AAAAACTACCAATTTAAA
Found at i:29934 original size:21 final size:20
Alignment explanation
Indices: 29890--29928 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
29880 TCAAAATAAA
*
29890 ATAAAAACTACCCATTTTAG
1 ATAAAAACTACCCATTATAG
29910 ATAAAAACTACCCATTATA
1 ATAAAAACTACCCATTATA
29929 TTATAAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.21, G:0.03, T:0.28
Consensus pattern (20 bp):
ATAAAAACTACCCATTATAG
Found at i:32871 original size:33 final size:33
Alignment explanation
Indices: 32834--32938 Score: 140
Period size: 33 Copynumber: 3.2 Consensus size: 33
32824 ATTAGCATCC
*
32834 AAAACAGATTTAGTATCATCACAAACAACACTT
1 AAAACAGATTTAGTATCATCGCAAACAACACTT
* *
32867 AAAACAGATTTAGTGTCATTGCAAACAACACTT
1 AAAACAGATTTAGTATCATCGCAAACAACACTT
** *
32900 AAATTAGGTTTAGTATCATCGCAAACAACA-TCT
1 AAAACAGATTTAGTATCATCGCAAACAACACT-T
32933 AAAACA
1 AAAACA
32939 CTCTTTGCAA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
32 1 0.02
33 60 0.98
ACGTcount: A:0.46, C:0.19, G:0.10, T:0.26
Consensus pattern (33 bp):
AAAACAGATTTAGTATCATCGCAAACAACACTT
Found at i:36476 original size:33 final size:33
Alignment explanation
Indices: 36434--36545 Score: 170
Period size: 33 Copynumber: 3.4 Consensus size: 33
36424 AGTTAAAGGA
*
36434 TCATGTGGCCGGTTGTATCCGGGCATGGCCGAG
1 TCATGTGGCCGGTTGTGTCCGGGCATGGCCGAG
* *
36467 TCATGTGGCCGATTGTGGCCGGGCATGGCCGAG
1 TCATGTGGCCGGTTGTGTCCGGGCATGGCCGAG
* *
36500 TCATGTGGCCGGTGGTGTCCGGGCATGGTCGAG
1 TCATGTGGCCGGTTGTGTCCGGGCATGGCCGAG
*
36533 TCATGTGGACGGT
1 TCATGTGGCCGGT
36546 GGTGCGCGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 71 1.00
ACGTcount: A:0.12, C:0.22, G:0.42, T:0.24
Consensus pattern (33 bp):
TCATGTGGCCGGTTGTGTCCGGGCATGGCCGAG
Found at i:36477 original size:13 final size:13
Alignment explanation
Indices: 36459--36510 Score: 53
Period size: 10 Copynumber: 4.5 Consensus size: 13
36449 TATCCGGGCA
36459 TGGCCGAGTCATG
1 TGGCCGAGTCATG
36472 TGGCCGA-T--TG
1 TGGCCGAGTCATG
*
36482 TGGCCG-GGCA--
1 TGGCCGAGTCATG
36492 TGGCCGAGTCATG
1 TGGCCGAGTCATG
36505 TGGCCG
1 TGGCCG
36511 GTGGTGTCCG
Statistics
Matches: 31, Mismatches: 2, Indels: 12
0.69 0.04 0.27
Matches are distributed among these distances:
10 14 0.45
11 3 0.10
12 1 0.03
13 13 0.42
ACGTcount: A:0.12, C:0.25, G:0.42, T:0.21
Consensus pattern (13 bp):
TGGCCGAGTCATG
Found at i:36757 original size:6 final size:6
Alignment explanation
Indices: 36748--36778 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
36738 TTGATGGCTA
36748 ATCTAT ATCTAT ATCTAT ATCTAT A-CTAT AT
1 ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT AT
36779 TAAAATTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.35, C:0.16, G:0.00, T:0.48
Consensus pattern (6 bp):
ATCTAT
Found at i:37314 original size:2 final size:2
Alignment explanation
Indices: 37307--37337 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
37297 CTACTTATTA
37307 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37338 AAGTTTTCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:38720 original size:119 final size:119
Alignment explanation
Indices: 38596--38819 Score: 387
Period size: 119 Copynumber: 1.9 Consensus size: 119
38586 TTCCTTTCAA
* *
38596 CTCCTCGGTGCTGATCAATCTTCAAGTTTGTCAAAAATCAAACATTTCATCACTCTCCTCTGTTT
1 CTCCTCGGTGCTGATCAATCTTCAAGTTTGCCAAAAATCAAACATTTCATCACTCCCCTCTGTTT
38661 TCTCCTTCACATCTTTTTTCC-CTTTCTTCTCCTTCCCCATCTGCTTCCCCATCC
66 TCTCCTTCACATC-TTTTTCCTCTTTCTTCTCCTTCCCCATCTGCTTCCCCATCC
* * *
38715 CTCCTCGGTGCTGATCAATTTTCAAGTTTGCCAAAAATCAAACCTTTCTTCACTCCCCTCTGTTT
1 CTCCTCGGTGCTGATCAATCTTCAAGTTTGCCAAAAATCAAACATTTCATCACTCCCCTCTGTTT
38780 TCTCCTTCACATCTTTTTCCTCTTTCTTCTCCTTCCCCAT
66 TCTCCTTCACATCTTTTTCCTCTTTCTTCTCCTTCCCCAT
38820 GAACCGTTCA
Statistics
Matches: 99, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
118 7 0.07
119 92 0.93
ACGTcount: A:0.17, C:0.36, G:0.07, T:0.41
Consensus pattern (119 bp):
CTCCTCGGTGCTGATCAATCTTCAAGTTTGCCAAAAATCAAACATTTCATCACTCCCCTCTGTTT
TCTCCTTCACATCTTTTTCCTCTTTCTTCTCCTTCCCCATCTGCTTCCCCATCC
Done.