Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009010.1 Corchorus capsularis cultivar CVL-1 contig09031, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55272

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
242--305
2
32.0
2
80
12
69
43
1
6
48
1.37
234--299
20
3.3
21
75
16
68
42
1
9
46
1.44
8908--8937
2
15.0
2
100
0
60
50
0
0
50
1.00
10150--10178
13
2.3
13
94
5
51
37
13
0
48
1.43
10309--10344
2
19.5
2
83
16
51
52
0
0
47
1.00
13139--13184
2
23.0
2
95
0
83
0
47
0
52
1.00
21706--21760
12
4.3
12
73
13
56
54
5
3
36
1.41
21695--21766
36
2.0
35
89
2
108
55
5
5
33
1.46
24302--24331
2
15.0
2
100
0
60
50
0
0
50
1.00
28616--28645
2
15.0
2
100
0
60
0
50
0
50
1.00
42572--42616
22
2.0
21
83
12
54
24
8
31
35
1.86
44860--44884
6
4.2
6
100
0
50
32
0
0
68
0.90
46306--46350
21
2.1
21
87
0
63
33
31
20
15
1.93

Tables:   1

The End!