Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009011.1 Corchorus capsularis cultivar CVL-1 contig09032, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144078

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16597--16668
28
2.5
29
86
4
101
19
22
15
43
1.88
16597--16668
29
2.5
28
86
6
99
19
22
15
43
1.88
16792--16863
29
2.4
29
86
2
99
43
18
19
19
1.89
20757--20781
2
12.5
2
100
0
50
48
0
0
52
1.00
20892--20956
29
2.2
29
83
0
76
41
26
10
21
1.86
29056--29111
27
2.1
27
96
0
103
26
16
30
26
1.96
33002--33036
6
5.8
6
96
0
61
80
2
0
17
0.84
43040--43160
62
2.0
61
95
4
219
17
11
16
54
1.70
48600--48633
17
2.0
17
94
0
59
29
14
2
52
1.56
62287--62315
2
14.5
2
100
0
58
51
0
0
48
1.00
67998--68027
15
2.0
15
93
0
51
30
6
30
33
1.83
69905--69930
9
2.9
9
100
0
52
7
34
0
57
1.27
72565--72609
6
7.5
6
92
7
74
20
0
0
80
0.72
72570--72606
11
3.3
11
92
7
65
16
0
0
83
0.64
76734--76800
29
2.3
29
81
0
80
40
22
10
26
1.86
77839--77935
48
2.0
48
100
0
194
32
20
9
37
1.85
84883--84919
18
2.1
18
94
0
65
29
10
18
40
1.85
95959--96126
54
3.1
54
64
26
138
39
10
2
47
1.51
95922--96217
110
2.7
108
91
5
441
37
11
1
49
1.48
103707--103733
6
4.5
6
100
0
54
48
14
0
37
1.45
105046--105071
2
13.0
2
100
0
52
50
0
0
50
1.00
105922--105963
21
2.0
21
86
9
59
16
0
35
47
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109692--109848
74
2.1
74
94
2
271
21
29
8
40
1.84
112298--112350
26
2.0
26
100
0
106
43
11
22
22
1.85
116071--116098
9
3.1
9
100
0
56
21
46
10
21
1.81
118065--118184
60
2.0
60
83
1
150
40
14
12
32
1.83
119026--119178
78
2.0
78
97
0
288
39
34
11
15
1.82
120636--120697
3
20.7
3
100
0
124
66
0
0
33
0.92
126571--126620
3
16.3
3
91
8
75
64
0
0
36
0.94
128342--128482
60
2.3
60
83
8
178
39
14
13
32
1.86
129672--129698
1
27.0
1
100
0
54
0
0
0
100
0.00
130342--130443
27
3.4
30
74
17
104
9
29
18
42
1.82
130358--130461
33
3.5
28
83
11
111
8
32
15
43
1.77
130382--130458
33
2.4
32
89
6
113
10
31
15
42
1.81
131169--131212
21
2.1
21
83
8
54
20
18
36
25
1.95
131320--131359
6
6.2
6
83
16
53
2
20
62
15
1.43
136211--136363
55
2.7
56
85
3
218
39
5
19
35
1.76
139938--140150
22
9.7
22
69
12
71
36
13
10
39
1.80
140278--140319
22
1.9
22
85
0
57
38
11
4
45
1.62
140322--140438
22
5.3
22
72
6
103
30
16
9
43
1.79
140545--140674
44
3.0
44
71
13
122
33
13
9
44
1.75
140569--141161
22
26.8
21
67
16
147
35
16
9
37
1.81
140984--141101
46
2.6
45
84
7
136
39
18
8
33
1.81
140985--141160
44
4.0
43
82
7
176
38
18
9
34
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
140983--141162
22
8.1
22
75
14
154
38
18
8
33
1.82
141234--141289
19
3.0
18
74
7
58
60
0
10
28
1.30
141222--141298
38
2.0
40
84
7
104
58
0
7
33
1.27
141313--141379
31
2.1
32
83
8
84
47
2
19
29
1.64
142115--142153
18
2.1
19
95
4
71
30
12
5
51
1.62
142361--142482
61
2.0
61
100
0
244
32
29
18
19
1.95
143567--143689
60
2.0
60
81
6
142
38
17
13
30
1.88
144040--144078
2
19.5
2
100
0
78
51
0
0
48
1.00

Tables:   1

The End!