Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009012.1 Corchorus capsularis cultivar CVL-1 contig09033, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57857

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4118--4183
31
2.1
32
88
5
100
46
3
19
30
1.65
7529--7605
19
4.0
19
72
11
59
45
3
50
0
1.20
9955--9993
20
2.0
20
85
14
55
0
5
10
84
0.76
18186--18257
2
36.0
2
88
0
108
47
2
2
47
1.31
20890--20924
5
7.0
5
90
0
52
54
0
45
0
0.99
20890--20927
16
2.4
16
91
4
60
55
0
44
0
0.99
26148--26204
12
4.8
12
76
8
53
5
14
1
78
0.99
33443--33632
92
2.1
92
98
1
373
42
15
14
27
1.86
41271--41310
20
2.0
20
95
0
71
57
17
5
20
1.58
43300--43333
17
2.0
17
94
0
59
26
23
26
23
2.00
43697--43723
2
13.5
2
100
0
54
51
0
0
48
1.00
43932--43994
19
3.2
19
86
10
83
61
0
1
36
1.05
43944--43998
3
19.3
3
89
10
89
65
0
0
34
0.93
44375--44407
7
4.7
7
89
10
50
0
9
0
90
0.44
44374--44407
8
4.5
8
89
10
54
0
8
0
91
0.43
44373--44407
15
2.4
14
90
9
61
0
8
0
91
0.42
46417--46447
2
15.5
2
100
0
62
51
0
0
48
1.00
48404--48565
31
5.5
31
77
13
155
17
23
27
32
1.97
48454--48556
53
1.9
53
90
0
161
16
20
27
35
1.94
50921--50952
16
2.0
16
93
0
55
21
12
12
53
1.71
51786--51846
30
2.0
30
96
0
113
16
21
14
47
1.82

Tables:   1

The End!