Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009017.1 Corchorus capsularis cultivar CVL-1 contig09038, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18879

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--35
2
17.5
2
100
0
70
51
0
0
48
1.00
1204--1232
2
14.5
2
100
0
58
48
0
0
51
1.00
4739--4772
13
2.6
13
95
0
59
0
26
0
73
0.83
11490--11540
14
3.5
14
79
10
66
49
21
7
21
1.75
11483--11541
30
2.0
30
96
0
109
47
20
6
25
1.74
15078--15428
33
10.5
33
84
3
414
21
19
33
26
1.97
15093--15428
138
2.5
138
81
7
367
21
19
32
26
1.97
15099--15428
171
1.9
171
86
2
475
21
19
33
26
1.97
15445--15479
18
1.9
18
100
0
70
48
11
22
17
1.79
15528--15572
18
2.5
18
100
0
90
11
13
35
40
1.80
17448--17511
33
1.9
33
100
0
128
48
6
15
29
1.70
18649--18727
23
3.3
23
92
3
122
34
20
0
45
1.51
18746--18790
11
4.1
11
83
11
65
53
8
0
37
1.32
18737--18784
22
2.2
22
85
7
62
52
10
0
37
1.36
18745--18787
22
2.0
22
95
0
77
53
9
0
37
1.33
18737--18849
33
3.5
33
70
20
105
54
9
0
35
1.33

Tables:   1

The End!