Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009018.1 Corchorus capsularis cultivar CVL-1 contig09039, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38210

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
173--218
21
2.1
22
84
4
58
41
8
36
13
1.75
2195--2239
12
3.5
13
81
9
56
57
11
0
31
1.33
3478--3546
27
2.6
26
77
11
70
2
26
0
71
1.00
3512--3542
16
1.9
16
100
0
62
6
16
0
77
0.97
6380--6666
143
2.0
143
99
0
565
21
20
28
29
1.98
10639--10707
31
2.4
27
80
19
93
39
10
11
39
1.75
14565--14603
13
3.0
13
96
0
69
15
25
7
51
1.70
15396--15450
27
2.0
28
92
3
94
43
20
3
32
1.69
15398--15456
27
2.1
28
87
3
84
47
20
5
27
1.71
15736--15768
6
5.7
6
96
3
59
54
12
0
33
1.37
25505--25533
15
2.0
15
93
6
51
31
27
13
27
1.94
28635--28663
14
2.1
14
93
6
51
34
6
20
37
1.80
30192--30220
9
3.3
9
95
4
51
6
20
0
72
1.07
31843--31869
6
4.5
6
100
0
54
55
14
0
29
1.40
34726--34756
15
2.1
15
93
0
53
83
3
6
6
0.88
35058--35115
23
2.5
23
100
0
116
15
25
46
12
1.80

Tables:   1

The End!