Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009019.1 Corchorus capsularis cultivar CVL-1 contig09040, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39709

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4617--4710
13
6.9
13
71
16
57
28
0
11
59
1.32
4621--4701
42
1.9
43
94
2
146
28
0
11
60
1.31
4640--4713
15
5.1
15
74
18
59
29
0
10
59
1.31
4719--4743
7
3.6
7
100
0
50
60
12
0
28
1.32
5720--5837
59
2.0
59
88
3
175
20
10
16
53
1.71
12141--12471
58
5.7
58
91
3
524
28
33
19
18
1.95
12528--12681
28
5.8
28
77
14
173
44
22
13
19
1.86
12584--12675
48
1.9
48
93
2
159
41
26
14
18
1.88
13157--13395
29
8.3
29
87
5
308
28
27
23
20
1.99
13157--13401
57
4.3
57
86
3
323
28
28
23
19
1.98
13537--14558
27
37.0
29
82
8
1163
25
30
22
22
1.99
13537--14558
56
18.5
56
84
7
1113
25
30
22
22
1.99
13565--14535
163
5.9
163
87
4
1128
24
30
22
22
1.99
14683--14797
28
4.1
28
88
0
176
27
31
25
15
1.96
14683--14802
56
2.1
56
92
0
195
29
30
25
15
1.95
14782--14822
19
2.2
19
86
0
55
41
21
24
12
1.87
14879--14940
24
2.6
24
94
0
106
35
25
19
19
1.95
18400--18711
155
2.0
155
96
0
579
33
19
13
33
1.91
25863--25993
70
1.9
70
90
0
208
48
23
11
16
1.78
30687--30712
7
3.7
7
100
0
52
11
0
0
88
0.52
32953--32983
12
2.7
12
95
5
55
0
25
16
58
1.38
34662--34715
24
2.1
24
83
10
63
68
11
3
16
1.33

Tables:   1

The End!