Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009021.1 Corchorus capsularis cultivar CVL-1 contig09042, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3771
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.30


Found at i:255 original size:13 final size:14

Alignment explanation


    Indices: 231--262  Score: 50
    Period size: 13  Copynumber: 2.4  Consensus size: 14

        221 GAATTTTAAT

                          
        231 TAAATCTAACTAAG
          1 TAAATCTAACTAAG

                          
        245 TAAAT-TAACTAAG
          1 TAAATCTAACTAAG

                  
        258 -AAATC
          1 TAAATC

        263 AATCAAGAAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 3
        0.85            0.00        0.15

Matches are distributed among these distances:
  12    4  0.24
  13    8  0.47
  14    5  0.29

ACGTcount: A:0.53, C:0.12, G:0.06, T:0.28


Consensus pattern (14 bp):   
TAAATCTAACTAAG

Found at i:1575 original size:19 final size:18

Alignment explanation


    Indices: 1542--1577  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       1532 TTGAAATAAT

                              
       1542 TCTTCAATGATCTTCAAA
          1 TCTTCAATGATCTTCAAA

                     *        
       1560 TCTTCAAATTATCTTCAA
          1 TCTTC-AATGATCTTCAA

       1578 GAAATCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.33, C:0.22, G:0.03, T:0.42


Consensus pattern (18 bp):   
TCTTCAATGATCTTCAAA
Done.