Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009023.1 Corchorus capsularis cultivar CVL-1 contig09044, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1693
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26


Found at i:1471 original size:42 final size:42

Alignment explanation


    Indices: 1422--1512  Score: 164
    Period size: 42  Copynumber: 2.2  Consensus size: 42

       1412 GCCAAGACTG

                                               *      
       1422 CCCGGCCCTGCCAAGCCACAGCCGCGCCACTTGCATCGCCTA
          1 CCCGGCCCTGCCAAGCCACAGCCGCGCCACTTGCACCGCCTA

                                                     *
       1464 CCCGGCCCTGCCAAGCCACAGCCGCGCCACTTGCACCGCCTG
          1 CCCGGCCCTGCCAAGCCACAGCCGCGCCACTTGCACCGCCTA

                   
       1506 CCCGGCC
          1 CCCGGCC

       1513 ATGCTCGGCC


Statistics
Matches: 47,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  42   47  1.00

ACGTcount: A:0.14, C:0.53, G:0.23, T:0.10


Consensus pattern (42 bp):   
CCCGGCCCTGCCAAGCCACAGCCGCGCCACTTGCACCGCCTA
Done.