genome.fa.s9025.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009025.1 Corchorus capsularis cultivar CVL-1 contig09046, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46614

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208--294	42	2.1	42	97	0	165	49	8	11	31	1.68
550--579	14	2.1	14	100	0	60	30	0	36	33	1.58
3116--3212	48	2.0	48	95	0	176	28	10	12	48	1.73
3133--3205	21	3.2	21	65	31	51	27	12	9	50	1.71
3269--3338	24	3.2	24	64	29	64	38	14	0	47	1.44
3287--3356	19	3.5	19	67	27	54	38	11	0	50	1.39
3266--3352	42	2.1	42	95	0	156	39	12	0	48	1.41
8368--8392	12	2.1	12	100	0	50	40	32	8	20	1.81
22398--22473	2	41.0	2	71	23	51	43	2	0	53	1.14
22383--22474	9	10.4	9	71	13	57	46	3	0	50	1.17
22390--22478	13	6.6	13	73	20	51	47	2	0	50	1.13
22448--22482	17	2.1	17	88	0	52	60	0	0	40	0.97
22517--22614	48	2.0	48	100	0	196	27	18	27	26	1.98
23366--23739	201	1.9	198	87	1	550	36	18	13	31	1.90
26272--26301	14	2.2	14	94	5	53	46	20	0	33	1.51
26427--26568	70	2.0	70	98	0	275	36	19	14	28	1.92
26499--26709	113	1.9	115	88	2	327	35	19	14	30	1.92
26510--26757	113	2.2	113	79	6	252	38	20	12	29	1.89
28683--28717	16	2.2	16	89	0	52	57	5	25	11	1.56
29357--29635	21	14.1	20	67	22	128	21	21	5	51	1.68
29371--29559	35	5.1	35	79	12	200	22	21	5	50	1.70
29454--29646	22	8.5	22	71	18	119	20	19	6	53	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29421--29561	71	2.0	71	92	0	237	22	19	6	51	1.70
29418--29581	71	2.3	71	82	9	224	21	20	6	51	1.68
29519--29603	44	1.9	44	92	0	143	20	21	4	54	1.63
29519--29676	22	7.2	21	71	11	95	19	19	5	55	1.63
29686--29745	21	2.7	23	77	12	72	20	13	5	61	1.50
29721--29759	14	2.7	15	84	8	53	20	15	5	58	1.55
29686--29748	22	2.9	22	76	9	67	20	14	4	60	1.52
29635--29803	35	4.8	34	76	13	146	20	16	4	59	1.53
29779--29874	50	1.9	49	85	2	129	21	22	4	51	1.65
30055--30161	55	2.0	53	92	3	178	26	17	6	49	1.71
30108--30311	71	2.9	71	98	0	390	29	20	4	46	1.70
30055--30182	55	2.4	53	85	11	158	28	17	5	48	1.69
29994--30232	126	1.9	124	87	8	351	27	17	5	48	1.69
30254--30365	54	2.1	55	91	1	181	25	23	4	46	1.71
29954--30422	196	2.4	195	83	7	583	27	18	5	47	1.70
30329--30421	35	2.6	35	94	3	159	29	19	5	46	1.72
30276--30381	54	2.0	54	88	3	162	28	21	4	45	1.72
30368--30422	17	3.2	17	70	14	58	25	18	5	50	1.67
30367--30520	69	2.2	68	84	7	204	27	16	5	51	1.65
30134--30586	229	2.0	230	86	6	630	27	19	5	48	1.70
30481--30641	54	3.0	54	90	1	252	24	17	7	50	1.71
30603--30683	37	2.2	37	88	0	117	27	18	7	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34250--34369	59	2.0	59	95	0	213	45	17	10	26	1.81
34886--34984	43	2.3	43	89	5	146	35	13	20	31	1.91
35022--35098	22	3.5	22	70	10	66	19	29	27	23	1.98
34998--35134	45	3.0	46	80	4	127	21	27	27	24	1.99
36889--36937	26	1.9	25	87	4	71	4	22	0	73	1.00
37416--37770	22	16.2	22	71	14	236	18	20	6	54	1.65
37449--37502	15	3.7	15	73	9	58	16	20	5	57	1.59
37483--37738	43	6.0	41	75	14	173	19	19	6	54	1.65
37955--38150	55	3.6	55	95	0	338	25	17	7	49	1.72
38146--38207	22	2.8	22	87	4	81	19	22	8	50	1.74
42088--42155	27	2.5	27	85	0	91	45	23	13	17	1.84
42792--42849	14	4.3	13	81	12	64	39	10	6	43	1.66
42792--42842	26	2.0	25	81	14	59	37	11	5	45	1.65
42792--42849	28	2.2	26	84	12	73	39	10	6	43	1.66
45539--45684	22	6.7	22	83	6	165	21	20	5	52	1.67
45591--45669	21	3.7	21	86	1	95	21	20	7	50	1.72
45588--45783	72	2.9	65	79	18	199	20	17	5	56	1.61
45668--45804	35	3.8	35	78	15	163	20	16	4	59	1.54
45653--45839	72	2.6	72	85	9	249	20	17	4	58	1.55
45724--45783	21	2.7	23	77	12	72	20	13	5	61	1.50
45759--45797	14	2.7	15	84	8	53	20	15	5	58	1.55
45724--45786	22	2.9	22	76	9	67	20	14	4	60	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45668--45841	35	4.9	34	77	12	156	20	17	4	58	1.54
45817--45912	50	1.9	49	85	2	129	21	22	4	51	1.65
45957--46133	34	5.0	36	68	18	122	25	15	6	53	1.65
46093--46199	55	2.0	53	92	3	178	26	17	6	49	1.71
46093--46220	55	2.4	53	85	11	158	28	17	5	48	1.69
46072--46417	126	2.7	127	81	11	351	28	19	4	47	1.69
46292--46404	55	2.1	55	93	0	190	25	23	4	46	1.70
46146--46349	71	2.9	71	98	0	390	29	20	4	46	1.70
45992--46456	197	2.4	194	85	5	616	27	18	5	48	1.69
46221--46456	126	1.9	126	88	2	357	27	20	4	47	1.70
46368--46460	35	2.6	35	93	3	150	29	18	5	47	1.70
46407--46465	18	3.3	18	65	21	52	25	16	5	52	1.64
46406--46559	69	2.2	70	85	7	208	27	16	5	51	1.65
46172--46614	230	1.9	231	86	6	628	27	18	4	48	1.69

Tables:   1

The End!