Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009026.1 Corchorus capsularis cultivar CVL-1 contig09047, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85335

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5064--5102
11
3.5
11
80
13
53
12
51
35
0
1.40
5061--5114
22
2.5
22
96
0
99
11
51
35
1
1.48
24816--24896
38
2.1
38
90
4
128
25
30
17
25
1.97
25094--25127
15
2.2
16
89
5
52
50
8
0
41
1.34
26553--26585
16
2.0
17
88
5
50
54
24
9
12
1.66
27096--27140
17
2.6
17
85
0
54
31
24
31
13
1.93
36170--36194
12
2.1
12
100
0
50
60
0
24
16
1.36
40324--40421
21
4.3
23
84
8
130
15
17
12
55
1.70
43071--43118
25
1.9
25
95
0
87
12
33
18
35
1.89
43115--43155
21
2.0
21
90
4
66
51
31
0
17
1.46
44016--44056
21
2.0
21
90
4
66
51
31
0
17
1.46
47774--47809
14
2.6
14
90
0
63
19
16
5
58
1.58
47772--47827
21
2.7
21
80
8
60
19
19
5
55
1.62
47888--47914
14
1.9
14
100
0
54
22
18
7
51
1.70
48057--48143
32
2.7
32
89
3
120
20
16
4
58
1.55
48226--48346
38
3.2
37
83
3
161
26
15
7
50
1.70
51806--51845
17
2.4
17
86
0
53
7
15
0
77
0.98
53582--56261
871
3.1
871
92
1
4369
27
16
19
36
1.93
55833--55883
25
2.0
27
84
7
70
11
15
9
62
1.53
58893--58917
13
1.9
13
100
0
50
32
16
20
32
1.94
69689--69739
22
2.3
23
76
13
61
66
3
29
0
1.09
84097--84192
31
3.1
32
80
10
126
40
8
14
36
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84444--84798
179
2.0
174
85
4
480
51
3
9
35
1.51
85221--85294
30
2.5
30
80
8
71
29
14
12
43
1.82

Tables:   1

The End!