genome.fa.s9032.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009032.1 Corchorus capsularis cultivar CVL-1 contig09053, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30460

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3--46	21	2.1	21	95	0	79	20	54	4	20	1.62
3--58	21	2.7	21	88	5	69	19	58	3	17	1.53
315--412	21	4.5	21	73	7	79	14	56	6	23	1.61
405--457	24	2.2	24	83	12	65	13	56	9	20	1.64
430--489	21	2.9	21	76	0	57	15	53	10	21	1.70
453--548	21	4.6	21	76	2	86	21	55	6	16	1.63
495--605	51	2.2	51	86	0	150	24	56	4	14	1.56
542--602	21	2.7	23	77	12	72	24	57	3	14	1.53
3967--4016	14	3.8	14	71	15	52	10	20	8	62	1.52
6709--6779	29	2.4	29	83	6	90	33	5	18	42	1.74
8426--8613	36	5.2	36	84	5	209	29	19	10	40	1.85
8426--8614	72	2.6	72	84	5	238	29	20	10	40	1.85
8447--8617	36	4.7	37	86	5	224	29	21	10	38	1.87
8601--8709	37	3.0	36	81	5	130	22	26	9	41	1.84
8695--8775	36	2.2	36	84	4	101	22	17	12	48	1.80
8713--8807	36	2.7	35	85	9	113	23	14	11	50	1.75
8713--8832	36	3.4	34	80	12	91	23	15	12	48	1.79
8783--9258	77	6.2	77	91	1	755	23	18	11	45	1.82
8784--9235	36	12.0	36	75	12	381	23	19	11	46	1.82
9255--9399	37	3.9	37	88	4	168	27	20	8	44	1.80
9380--9613	45	5.2	45	88	1	315	26	19	11	43	1.84
9620--9697	36	2.1	36	80	2	84	26	16	14	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11464--11884	37	11.3	37	74	11	315	28	20	18	32	1.96
11466--11884	114	3.7	111	72	14	311	29	20	18	32	1.96
16320--16351	2	16.0	2	100	0	64	50	0	0	50	1.00
17099--17311	36	6.0	36	83	9	249	29	21	9	39	1.85
17100--17300	105	1.9	106	90	3	325	28	21	9	40	1.84
17113--17303	69	2.7	71	87	8	264	29	21	9	39	1.85
19469--19523	13	4.4	13	80	15	62	30	1	7	60	1.35
21635--21716	31	2.6	31	82	0	92	28	4	19	47	1.70
21977--22016	19	2.2	19	95	4	73	30	10	10	50	1.69
21982--22022	19	2.2	19	90	0	64	24	7	14	53	1.66
24921--24956	19	1.9	18	88	5	54	33	22	2	41	1.68

Tables:   1

The End!